| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1551 |
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| Symbol | |
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| ID | 5613827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1851744 |
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| End bp | 1852775 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932420 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001473290 |
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| Protein GI | 157374690 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4168] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000405821 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCACGAT ACCTTCTTCG CAGGCTGAAC CTTTTTCTTG CAACCTCTTT TGTACTGTTT
ATCGTGCTGT TCATTGTAAC CAGCCACTTT CCGGTTGAAA AAAGTTTTGC GCTAACCGGA
TTACACTCAC CCAATGCACA GCAAATAGAA CAGATAGAGA AGAATTACAG CCTAAATGAT
GGACAATTCA GTCAATTTTT CTCCTATCTG CAGCAAAGAT TAAGTGGGGA TTTAGGTATC
TCAGCCACCT CTCAACGACC CGTTATCGAA GAACTGGCAT CGGTACTTCC GGCATCATTT
GAACTGGCGG CCGTTTCAGC CATGCTGGCA TTAACATTGG GGATCCCGCT CGGGGTGCTT
GCCTCCTTGA GCAGACATAA AATTACACAA CACACGATTA TGGCAATAAC CTTAACCGGA
TACTCAATTC CGGTATTTTG GTTGGGCCTG ACTCTCTCTC TGTGGTTTGG CGTTCAGCTC
GGCTGGCTGC CGATTTCAGG CCAGTTAAAC CTGCTCTATG AGATAGAACC AGTCACCGGA
TTTGTATTGA TAGACACCCT GTTATCAGAT TCGCCGTACA GTACCTCGGC ATTTATAGAT
GCCTTACTGC ATATCATCCT ACCGGCTATC ACGCTGGCAG TTTTGCCCTT CACTGTTGTG
GTCAGAATTA CCCGAGCGGC AATCATCACG ATTATGGATC AAACCTATAT TAAGGCTGCA
GAGGCCCGAG GGCTTCATAC CTCACGGGTA GTATTACGTC ATGCATTACC TAATGCCCTA
ATTCCGGTCT TAAAAAATCT GGGATTAATG TTAGGCCCAT TCGCCAGTTA CGCCATGGTA
GTAGAGGTTA TTTTCGCCTG GCCCGGTGTC GGTGCCTGGC TCGTATCGGG AATATATCAA
CGCGATTACA CCGTTATTCA GGGTGGGGTC TTGGCTGTCG CATTGATCAT CATCTTTATC
AGTATCATGA TTGAAGTACT TTATACGGCC ATCAACCCTC TCAGCAGGAA AGAACTTTAT
GCCTCAAATT AA
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| Protein sequence | MARYLLRRLN LFLATSFVLF IVLFIVTSHF PVEKSFALTG LHSPNAQQIE QIEKNYSLND
GQFSQFFSYL QQRLSGDLGI SATSQRPVIE ELASVLPASF ELAAVSAMLA LTLGIPLGVL
ASLSRHKITQ HTIMAITLTG YSIPVFWLGL TLSLWFGVQL GWLPISGQLN LLYEIEPVTG
FVLIDTLLSD SPYSTSAFID ALLHIILPAI TLAVLPFTVV VRITRAAIIT IMDQTYIKAA
EARGLHTSRV VLRHALPNAL IPVLKNLGLM LGPFASYAMV VEVIFAWPGV GAWLVSGIYQ
RDYTVIQGGV LAVALIIIFI SIMIEVLYTA INPLSRKELY ASN
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