| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1550 |
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| Symbol | |
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| ID | 5613826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1850867 |
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| End bp | 1851757 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932419 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001473289 |
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| Protein GI | 157374689 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0010262 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTCAAA TTAAGATCTA TCAGGAAGAT GAGATCCCAT CTCCCATGAA AAAGATCTGG
CACTCTTTTT CTGATAACCC ATTTGCATTT GCTGGCTTAT GGGCTGTTAT TGGTATCTTG
TTACTCTCAA TATTTGGCCC TCTCATTGCC CCCTATGCGC CAGAGCAACA AGATCCTCAC
GCATTGCTGC TTGCGCCCTC TTGGGACCCG GCTGGTACCG TTGAGCACTT TCTTGGAACC
GATGATCTGG GCAGAGATAT CTTTAGCCGC TTACTACATG GGGCACATCT GACATTCGGA
ATGGCATTGG GCATAGTCGT AACCGCATTG ACTTTAGGCT TCGTTATCGG TGCGGTAGCA
GGAATGATGA AAGGGTTGAA GTCGAGCATT TTAAGCCATC TGCTCGATGC ACTTCTGTCA
ATTCCGTCAC TTCTGATGGC GATTCTCGTT GTCGCGGTAA TGGGCCCGGG GCTTAATAAT
GTATTTTGGG CCGTCGGACT CGCTCTCACC CCACAGTTTG TTCGCTCAAT ACACCAAGCC
ATTCATGAAG AGTTACAGAA AGAGTATGTG ACAGCGGCGA AACTCGATGG TGCGAATCCG
TTTCAGGTAT TTTGGTATGT TATTATGCCT AATGTTTGGG ATACTGTGAT TATTCAAACC
ACCTTAGGCA TATCTGCGGC TATTCTGGAT ATTGCGGCTT TAGGCTTTTT GAATCTAGGT
GCACAGGCCC CGAGTCCGGA ATGGGGTGCG ATGGTTTCAC AAGGTATGGA TAATTTATTA
ACTGCACCTT GGACGGTCAC CATTCCCGGC ATTGCCATTT TATGCAGTGT ACTTGCAATT
AACTTAGTCG GTGACGGCTT GCGATCGGCG CTATCGCCTA TCAATAACTA G
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| Protein sequence | MPQIKIYQED EIPSPMKKIW HSFSDNPFAF AGLWAVIGIL LLSIFGPLIA PYAPEQQDPH
ALLLAPSWDP AGTVEHFLGT DDLGRDIFSR LLHGAHLTFG MALGIVVTAL TLGFVIGAVA
GMMKGLKSSI LSHLLDALLS IPSLLMAILV VAVMGPGLNN VFWAVGLALT PQFVRSIHQA
IHEELQKEYV TAAKLDGANP FQVFWYVIMP NVWDTVIIQT TLGISAAILD IAALGFLNLG
AQAPSPEWGA MVSQGMDNLL TAPWTVTIPG IAILCSVLAI NLVGDGLRSA LSPINN
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