| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1549 |
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| Symbol | |
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| ID | 5613825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1849836 |
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| End bp | 1850849 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932418 |
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| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
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| Protein accession | YP_001473288 |
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| Protein GI | 157374688 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4170] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0011748 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCATTAC TTGATATTCG AAACCTTACA ATCGAACTTG ACACGCCCCA CGGACGAGTC
AAAGCACTCG AAAGAGTCAG CCTAACGATT AATCCTGCCG AGATACACGG TCTCGTCGGT
GAATCCGGCT CGGGTCGCAG CCTGCTTGCA AGAGCGATTT TAGGGATCCC CGGTCATAAC
TGGCGCATAC AGGCCGATCG TATGATGTGG GATGGTCACA ACCTGTTAGA GATGAGTCCA
AAACAACGAC GGAACTTAAT GGGCAGTGAA ATAGCCATGA TATTTCAAGA TCCCTCCAGT
AGCTTAGACC CTGTTATTGT GGTTGGGGAT CAGCTTATTG AAGCCATGCC CGAAAATAGG
AAGCTTCATT TTTGGCTGCG AGCGAAAGAC AAGAAGCGTA CGGCAGAAAA ATGGCTACAT
AAGGTTGGCA TCAAGGACAC GCAGAAAGTC ATGTCCAGCT ATGCGTGGGA GCTCTCTGAG
GGCGAATGTC AGAAAGTCAT GATTGCGATT GCGGTTGCAA ACCAGCCACG CCTTCTGATC
GCCGATGAAC CCACAAATTC CATGGAAGCT AAAACTCAAG CCCAGATATT CAGGCTGTTG
ACCAAATTAA ATCAATTACA CAATGTTTCG ATATTACTTA TCAGCCATGA ACTGGAAACC
TTATCAATTT GGTGTAACCA ACTTTCCGTC ATGTATTGTG GCCAGATAAT GGAGTCAGGT
CCTACATCTG AAATTATCAA TCAGCCATTT CATCCCTATA CTAAAGCCCT ACTGAACAAT
ATTCCTGACT ACTCGGGTCT GGTACAACAC AAGTCGATGA TGAAAACCTT GCCAGGTTCG
GCTCCTGCAT TGCAACACCT CCCCATTGGC TGTCGCTTAG GTCCACGCTG CCCCGAAGCG
CAGAAAAAAT GCGTTAATCA ACCCAAACTG TGCCATAAGA AGAACCGCTA TTTTGCGTGC
CATTTCCCAT ACCATGAAGA GCCATGTAAT GACGACGCCA CTACTACAAG TTAA
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| Protein sequence | MPLLDIRNLT IELDTPHGRV KALERVSLTI NPAEIHGLVG ESGSGRSLLA RAILGIPGHN
WRIQADRMMW DGHNLLEMSP KQRRNLMGSE IAMIFQDPSS SLDPVIVVGD QLIEAMPENR
KLHFWLRAKD KKRTAEKWLH KVGIKDTQKV MSSYAWELSE GECQKVMIAI AVANQPRLLI
ADEPTNSMEA KTQAQIFRLL TKLNQLHNVS ILLISHELET LSIWCNQLSV MYCGQIMESG
PTSEIINQPF HPYTKALLNN IPDYSGLVQH KSMMKTLPGS APALQHLPIG CRLGPRCPEA
QKKCVNQPKL CHKKNRYFAC HFPYHEEPCN DDATTTS
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