Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1545 |
Symbol | |
ID | 5614154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1845253 |
End bp | 1847118 |
Gene Length | 1866 bp |
Protein Length | 621 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932414 |
Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
Protein accession | YP_001473284 |
Protein GI | 157374684 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000368753 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00157323 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTAGAAA AGATTCGCGA AGGCTCACAG GGCGTGATTG CAAAAAGCAT TCTGGTTCTA GTAATACTTT CCTTTGCATT TACTGGCGTG AGTAGTTACC TAGGATCATC TACAGAGGCA GCCGCTGCCA CCGTTAATGG TGAAGAGATC AGTGAATCAG CCTTAGAACA AGCCTATCAA AATGAGCGCG CTCGTTTAGA GCAACAGCTA GGCGAGATGT TTGCAGCGTT ATCGGCTGAT GAACGTTATC TATCGAGTGT AAAGCAAAGC GTTTTAGAGC GCCTTGTTGC AGAGAAATTA TTAGATCAGA CCGCTACAGA CTTAGGTCTG CGAGTATCTG ATGCACAGAT CAAAAATGCC ATCATGACAG AGCCTGCATT TCAAACTGAT GGTGTGTTCG ATAATGATAG ATATCAGGCT ATCCTTCGAC AGCTTGGCTA CCAAGCGAAC TCGTTCAGAG ATATGATGCG CACCGATATG ACTCGTCGTC AGCTGGTCGC TTCGTTAGTG GGCTCTGAAT TTGTACTTCC AGGTGAAGCA AACTATCTTG CCGATATTCA AGGTCAGACT CGTGATATTC GCTACCATTG GGTTGATGCG GCGCCTTTCA TCGCCGAAGC TGTTGTTACA GATGAACAGG CAAAATCATA TTACGATGCA AATTTAGCCC AGTTTATGAG TCCTGAAACA TTGAGCCTTG AATATATTGA ACTCAATGCA AAGGATATGG CTGCCGGAGT AACCGTTTCT GATGAAGAAG CTAAGACTTA TTATGATGAG AATAAGCAGC AGTACCTAAA AGCTGAAAAG CGTTTAGCTG CGCATATTCT CGTTAGCCTT GGTGACGATG ACTCTACAGC TAAGGCAAAG GCCAATGCAA TCTACGCTAA ATTACAAGCG GGTGAAGAGT TCTCTGAATT AGCTAAAGCT GAATCTGAAG ATACTTTCAG TGGTGAGCAA GGCGGTCAGT TAGACTGGTT TGAGCCTGGC GTCATGGAGC CAGCATTTGA CGAAGTGCTT TATTCACTGT CTAAAGGTGA ATATTCAGCT GTCGTTAAAA CCAGCTTTGG CTACCACATC ATCAAGCTAC TCGATGTTCA GCCTGCTGCT GAAGCGGCAT TTGAAGATGT GAAGAGTAAG ATCCTTGCCC AGCTGAAAGA GAAGCAAGCA GTCGATCAGT ATTTTGGTCT GCAGCAGACT CTTGCCGATG TGACTTATGA AGTTCCTGAT ACGTTAAGCG AAGCGGCGAC AGAGTTAGGT ATTGAAGTTA AATCTACGCC TGTATTTTCT AGAAACAACG CACCTGCGCC ATTTGATAAC CCTGAGGTAT TGAAGGCTGC ATTCTCGACT AACGTGTTGC TCGATCGCAT GAACAGTGAT GTTATTGAGA TTGAAGCTAA CCACGCGATG GTTGTTCGCA TCAAGTCTCA TACCGCAGCC GGTACCGTTG ATTTTGCTAA GGTTAAGTCT GCCATTGTTG AGCGTCTGCA ACAGGAGCAA GCTAATGAGG TCGCACGGGC TAAGGCTCAA GAGTTAATGA CATCATTCAG TTCAGACTCT GCAGGCATTG ATTTTATCAC CAAGACTAAA CTGGGTCGTT TCGACCAGGA GATCGATGGT GCTATCGTCG GTAAGGCTTT CCAGATGGCT CAGCCAGCTG CTAGTGCAGT GGTTGATACC GTTGCACTTG CTTCTGGTTA TGCGGTAGTC GTGCTCGATA AGGTTAATGC AGCAGAAGCT ATCGATGACA ATATGTTGAG CTCTTTGAAG CAAAGATTAA GCTCGCAGTA TAGCGAAGGT GACTACAGAG CACTTATCGC AACACTGAAA GCGAACGGTG AAGTGCTTTA CTCGTCGGCA CAATAA
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Protein sequence | MLEKIREGSQ GVIAKSILVL VILSFAFTGV SSYLGSSTEA AAATVNGEEI SESALEQAYQ NERARLEQQL GEMFAALSAD ERYLSSVKQS VLERLVAEKL LDQTATDLGL RVSDAQIKNA IMTEPAFQTD GVFDNDRYQA ILRQLGYQAN SFRDMMRTDM TRRQLVASLV GSEFVLPGEA NYLADIQGQT RDIRYHWVDA APFIAEAVVT DEQAKSYYDA NLAQFMSPET LSLEYIELNA KDMAAGVTVS DEEAKTYYDE NKQQYLKAEK RLAAHILVSL GDDDSTAKAK ANAIYAKLQA GEEFSELAKA ESEDTFSGEQ GGQLDWFEPG VMEPAFDEVL YSLSKGEYSA VVKTSFGYHI IKLLDVQPAA EAAFEDVKSK ILAQLKEKQA VDQYFGLQQT LADVTYEVPD TLSEAATELG IEVKSTPVFS RNNAPAPFDN PEVLKAAFST NVLLDRMNSD VIEIEANHAM VVRIKSHTAA GTVDFAKVKS AIVERLQQEQ ANEVARAKAQ ELMTSFSSDS AGIDFITKTK LGRFDQEIDG AIVGKAFQMA QPAASAVVDT VALASGYAVV VLDKVNAAEA IDDNMLSSLK QRLSSQYSEG DYRALIATLK ANGEVLYSSA Q
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