Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1538 |
Symbol | cysS |
ID | 5612123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1835163 |
End bp | 1836542 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932404 |
Product | cysteinyl-tRNA synthetase |
Protein accession | YP_001473277 |
Protein GI | 157374677 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0215] Cysteinyl-tRNA synthetase |
TIGRFAM ID | [TIGR00435] cysteinyl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.205032 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0027552 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTGAAGC TATACAACAG TCTGACCCGC CAAAAAGAGG AATTCAAACC ATTACAGCCA GGAAAAGTTG GCATGTATGT GTGTGGGATA ACCATCTATG ACCTTTGTCA TATCGGTCAC GGTCGTACTT TTGTCTCTTT CGACATGATA GTGAGATACC TGCGTTACTC CGGATATGAT GTGAACTTTC TACGCAACAT TACCGATGTT GACGACAAGA TCATTAAGCG TGCTAATGAA AATAAAGAGA GCTGTGAGTC ATTGACCGAA CGGTTAATTG GCGAGATGCA TCGTGATTTT GATGCGCTTA ATATGAAGCG TCCCGACTTT GAACCAAGAG CGACGCTACA TATACCTGAG ATTATCGATA TGGTTGAAAA ACTTATCGAG AAAGAACATG CCTATGTGTC AGGTAATGGT GATGTACTGT TCAGTGTCTC CTCTTTTCCT GAATATGGAC GTCTGTCCGG ACAAAACCTA GACCAGTTAC AAGCCGGTGC CCGAGTCGAA GTGGAAGACA CTAAACGTGA TCCAATGGAT TTCGTGCTGT GGAAGATGTC CAAGCCTGGC GAGCCTACAT GGGAGTCACC TTGGGGACCG GGCCGCCCTG GCTGGCACAT TGAATGTTCA GCAATGAACT CTAAGCACTT GGGTCAACAT TTCGATATCC ATGGTGGCGG CTCAGATCTT CAATTTCCTC ACCATGAGAA TGAAATTGCT CAGTCTTGCT GTGCTCACAA CACGCCGTAC GTAAATTACT GGATGCATAC CGGTATGGTG ATGGTCGATA AAGAGAAGAT GTCTAAGTCG TTAAACAACT TCTTCACCAT CAGAGATGTT TTAGAGCACT ATGATGCGGC AACCGTGAGG TATTTCCTGT TGTCTGGTCA TTACCGCAGC CAACTGAACT ACTCAGAAGA CAATCTTAAG CAGGCAAAGT CGGCGCTTGA GCGTCTCTAT ACATCACTCA AAGGTTTAGA CCTGTCGGTT GAAGCTGCAT CTGCCGATGA GTATGTCGCT AAGTTTAAGG TCGCAATGGA TGATGACTTC AATACGCCGG AAGCTTACTC GGTGCTATTT GAGATGGTTC GAGAGATAAA CCGTCTAAAA GAAGCTGATA ATGCTAAAGC ATCTTCACTC GGTGTAAAAC TTAAAGAGCT TGCCGATGTA TTAGGTATAT TGGACCAGGA TGTCGACACT TTCTTTAAGG GTGAAGGCAG TACAGATGAA GTGGCGGAGA TCGAAGCCCT GATTGCCGAG CGTAACAGAG CGAGAGCCGA GAAGGATTGG CCCGCTGCCG ATGTTGCCCG TGATGGCTTG AACGCACTCG GTGTTATCTT AGAAGATGGC CCGGAAGGTA CAACCTGGCG TAAGAAGTAA
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Protein sequence | MLKLYNSLTR QKEEFKPLQP GKVGMYVCGI TIYDLCHIGH GRTFVSFDMI VRYLRYSGYD VNFLRNITDV DDKIIKRANE NKESCESLTE RLIGEMHRDF DALNMKRPDF EPRATLHIPE IIDMVEKLIE KEHAYVSGNG DVLFSVSSFP EYGRLSGQNL DQLQAGARVE VEDTKRDPMD FVLWKMSKPG EPTWESPWGP GRPGWHIECS AMNSKHLGQH FDIHGGGSDL QFPHHENEIA QSCCAHNTPY VNYWMHTGMV MVDKEKMSKS LNNFFTIRDV LEHYDAATVR YFLLSGHYRS QLNYSEDNLK QAKSALERLY TSLKGLDLSV EAASADEYVA KFKVAMDDDF NTPEAYSVLF EMVREINRLK EADNAKASSL GVKLKELADV LGILDQDVDT FFKGEGSTDE VAEIEALIAE RNRARAEKDW PAADVARDGL NALGVILEDG PEGTTWRKK
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