| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1537 |
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| Symbol | |
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| ID | 5612122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1834399 |
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| End bp | 1834962 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932403 |
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| Product | peptidylprolyl isomerase |
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| Protein accession | YP_001473276 |
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| Protein GI | 157374676 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.243547 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.011223 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAATATG GCAATTGCGT TAGAATCCAG CCACAATTTA TTATTGCTAA ACTTACTGAG
AATCAAAACA TGATCACTCT TCACACCAAC CACGGTGACA TTACTCTTGA ACTGGACGCA
GAAAAGGCGC CAATTACCGC TGAAAACTTT ATCAATTACG TAAAAGATGG TTTTTACGAC
GGTACTGTCT TTCATCGTGT AATCGACGGT TTCATGGTTC AAGGTGGCGG TTTCACTGAA
GATATGGCTC AAAAGCGTTG CAATGAAACC ATCAAGAACG AAGCGAATAA TGGCCTTTCT
AATGTGACCG GTACTGTCGC AATGGCGAGA ACCTCAGATC CGCATTCAGC TACGGCTCAG
TTCTTTATTA ACATCAACGA CAACACTTTC CTCGATTTCA AATCTGAATC GGCTCAAGGA
TGGGGTTACT GTGTATTTGC CAAAGTATCA GCAGGCATGG ACGTGGTTAA TAAGATCAAG
GCTGTAAGCA CTGGCAACCG TGGTATGCAT CAAGATGTCC CTCTTGAAGC GGTTATCATT
GAAAAAGTAA CCATTGCTGA ATAA
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| Protein sequence | MQYGNCVRIQ PQFIIAKLTE NQNMITLHTN HGDITLELDA EKAPITAENF INYVKDGFYD
GTVFHRVIDG FMVQGGGFTE DMAQKRCNET IKNEANNGLS NVTGTVAMAR TSDPHSATAQ
FFININDNTF LDFKSESAQG WGYCVFAKVS AGMDVVNKIK AVSTGNRGMH QDVPLEAVII
EKVTIAE
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