| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1530 |
|---|
| Symbol | |
|---|
| ID | 5613496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1825908 |
|---|
| End bp | 1826873 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640932396 |
|---|
| Product | cytochrome c family protein |
|---|
| Protein accession | YP_001473269 |
|---|
| Protein GI | 157374669 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01905] doubled CXXCH domain
[TIGR03508] decaheme c-type cytochrome, DmsE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.892773 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACA TGGAATCCGC TAGGTTCAAA CAAAAGGTCC CTCTCTTCCT TTTATTTGCT
TTAACAACAA TCTGTTTCAA TATATTAGCC GCGCCATGGG ATGACAAAGA CCCAGCCGAA
GTAGAGGCGA TTCTCGACAG TAAATTTGTC GAAGGAAAAT ACTCCTCGAA AGGTGCAGAT
TCTTGCCTCA TGTGTCACAG AAAGAGTAGC GATGTGATGG CGCTGTTTGA TGGTGTTCAC
GGAAACCCTG ACATTAACGG CTCTCCCATG GCCGATCTTC AATGCGAAGC TTGTCACGGA
CCCCAGGGCA AGCATAATCG CGGCGGCAAA GAGCCCATGA TCACATTCGG AGCCGACTCT
CCCCTCCCCG CTCAAAAACA AAATAGTGTC TGCCTCAGTT GCCATAATGA CGAGCAACGC
ATGGTATGGA GTGGCAATCA CCATGACAAT GCCGATGTGA GCTGTAGCGG TTGTCATTTA
GTTCATACAG GTAAAGACCC AATTAGTGAC CGCAAGCGAG AAGTCGAAGT ATGCAGCTCA
TGTCATACCC AACAAAAAGC CGATATCCAT AAACGCTCAG CCCATCCATT AAAGTGGCAG
CAGATGGTCT GCAGTGATTG TCATAACCCC CACGGAAGTT TAAGTGACTC GAACCTTAAG
CAGATGAGTG TTAACGAGAA CTGCTACTCC TGTCACGCCG AAAAACGGGG CCCTAAACTC
TGGGAACATT CGCCGGTGAG TGATAACTGC GCTAATTGTC ATAACCCACA TGGCAGTGTC
AATGAAGGCA TGCTTATCAG CAAGCCTCCT CAACTGTGTC AACAGTGTCA TGCCTCTGAT
GGCCATGCTT CAAATGCCGT TTTTGCCAAT TCAAATAATG CCTTTAATGC TGGGCAAAGT
TGCATGAACT GCCACAGTCA GATCCATGGC TCTAACCATC CATCCGGCAA GCTGCTGCAG
CGCTAA
|
|---|
| Protein sequence | MMNMESARFK QKVPLFLLFA LTTICFNILA APWDDKDPAE VEAILDSKFV EGKYSSKGAD
SCLMCHRKSS DVMALFDGVH GNPDINGSPM ADLQCEACHG PQGKHNRGGK EPMITFGADS
PLPAQKQNSV CLSCHNDEQR MVWSGNHHDN ADVSCSGCHL VHTGKDPISD RKREVEVCSS
CHTQQKADIH KRSAHPLKWQ QMVCSDCHNP HGSLSDSNLK QMSVNENCYS CHAEKRGPKL
WEHSPVSDNC ANCHNPHGSV NEGMLISKPP QLCQQCHASD GHASNAVFAN SNNAFNAGQS
CMNCHSQIHG SNHPSGKLLQ R
|
|---|
| |