| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1528 |
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| Symbol | |
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| ID | 5613221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1821682 |
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| End bp | 1823622 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932394 |
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| Product | decaheme cytochrome c MtrF |
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| Protein accession | YP_001473267 |
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| Protein GI | 157374667 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATA AAAGCACAAA ATCAAATACT GTGAGCCTGT ACAGATTAAT ACCGTTAACC
TTAACACTGC TCCTTGCGGC GTGCGGCAGC GGGGATGATG GCGCGCCGGG GAATCCCGGC
GAACCTGGCG GACCACCGGC GAGTGATATT TCCACATTAA TGGTTGAGGT CACTGGTGTT
ACAACCGATG CAGGTATCGC AACGGTAAAC TATCGTGTCA GCAATCAGGA CGATGAACCA
GTAGTAGGCA TTAGTACAGG TACGTACATT GCCGCTCAAC TGCTTCCCCA AGGCTACACC
AACGCCGGTA ACAGCAGCCA ATGGCAGTAC TTTGTCTCGG AAAGCTGTTC ATCGGGTTGC
ACCGGTGAAC TGATCGATCA TAAAAACGGT AGTTACAGCT ATACGTTCAG TGCTGCATTT
GATGGTTTAA ATGATGTCAG CTATCAGCCC GGCTCGACTC AGAGGGTAAT GATCAAGATT
GGTGGAGACA CCCTGCCCGA TGGCAGCCCA CTGCCAACCA CTAACCAACA CTTCGACTGG
AGCGACAGCG GTGAGCCCGC CTATACCCGT GATCTTATCG CCATCGAGAC ATGTAACAGC
TGCCATAACG ACTTGGCTTT TCACGGTCCT TCTGGTTTCG AGAAGTACAA TGAAGTTGAG
ACCTGTGTAA CCTGTCACAA CGCCGATAGG GTGAGTAACC CCGACAATAT TTTTCCACAG
ATGATCCACA CTAAACATCT GGTCGGTTTC CCGGGAGAAT TAGCTAATTG CCAAACCTGC
CACGCCAGCG ATGAAACCTT AACCGAAAAC ATGAATTGGG CACGGGTTCC TGGAATGGAA
GCCTGTGGTT CTTGTCATAC CAATATTGAT TTCCCCGCAG GCGAGGGGCA CCCGGCGCAA
ACTGATAACA GTAACTGTGT CGCCTGTCAT AACTCAGACT GGACGGCGAA CGTCCATAAT
GATGGCGGTG ACGATGAGGC GCTAGGGCAA TTTAACGCTA ACATAGTGAG TGCGAGCCTT
ACAGGCAATA CAGTGACCTT TAACATCACG CTAACCAATC CTGTAACCAA TACGGTTTAT
GCTGATAGCG CCGATAAGCT CGATTTTATC GACGATCTTC GCGTCTATGC TAATTGGGGC
ACCAGCTTCG ACTATGCGCC TTCGGCTAAA TCACTCAAGC TGCAAGACAG TTCGCCAATT
TCAGGAAGTA ATGGTATTTA CACTTATGCA ATCAGCGGTC TGACCATTCC TGCCGGAACC
GAGTCCGACA GGGGAGTCTT AGCTATCCAG GGTAAGCTCT GCTCTTCACA AGGTGAATTA
GGTGATTGCG AAGAGGATGC GTTCTCGACA GTAAACCTTA AATCGAGCCA TCAGTTCTTC
TCTGCCGCCG AGTTAACGGA CACAGGCAGG AGAGTGGTTG TGACCAACGA CACTTGTGGA
AGTTGCCATG GCGTACAGGC CCTTAACTTC CACGGCGCAC GCAATGATTT ACAGGGGCAA
TGCCAGCTTT GTCATAACCC GAATATGATG GCCGATGCGA CTGCATCTAA TCCGTCTGTT
TCCACGGCAG ACTACAAGCA CCTGATCCAT TCGCTCCACA GTGCACAACG TGAGGGCTAT
GAGGGTCTCA ATTATCCGGG ACAGATCGGA AACTGTGCCC AATGCCACGC CAGTGATGAC
ACAGGACTTC TCAGCGCGGC GCTCCCCCTA AATTTGGGTG TAAAACCATT AGCCATAGAT
AACGGCACCT TTACCAGTGC AACCGCAGCC ATCTGCAGTG ATTGTCACTT CAGTGACACA
GCCAAAAATC ATATGACTCA ACAGGGCGCC GTATTTATGG GTAGCGAGGC CGATGCGACA
GCGGGTACAG AAAGCTGTAG CACCTGTCAC GGCGAAGGTG CTCCTGCAGA TATATTAAAA
GTGCACCCAA TCAACGAATA A
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| Protein sequence | MMNKSTKSNT VSLYRLIPLT LTLLLAACGS GDDGAPGNPG EPGGPPASDI STLMVEVTGV
TTDAGIATVN YRVSNQDDEP VVGISTGTYI AAQLLPQGYT NAGNSSQWQY FVSESCSSGC
TGELIDHKNG SYSYTFSAAF DGLNDVSYQP GSTQRVMIKI GGDTLPDGSP LPTTNQHFDW
SDSGEPAYTR DLIAIETCNS CHNDLAFHGP SGFEKYNEVE TCVTCHNADR VSNPDNIFPQ
MIHTKHLVGF PGELANCQTC HASDETLTEN MNWARVPGME ACGSCHTNID FPAGEGHPAQ
TDNSNCVACH NSDWTANVHN DGGDDEALGQ FNANIVSASL TGNTVTFNIT LTNPVTNTVY
ADSADKLDFI DDLRVYANWG TSFDYAPSAK SLKLQDSSPI SGSNGIYTYA ISGLTIPAGT
ESDRGVLAIQ GKLCSSQGEL GDCEEDAFST VNLKSSHQFF SAAELTDTGR RVVVTNDTCG
SCHGVQALNF HGARNDLQGQ CQLCHNPNMM ADATASNPSV STADYKHLIH SLHSAQREGY
EGLNYPGQIG NCAQCHASDD TGLLSAALPL NLGVKPLAID NGTFTSATAA ICSDCHFSDT
AKNHMTQQGA VFMGSEADAT AGTESCSTCH GEGAPADILK VHPINE
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