| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1524 |
|---|
| Symbol | |
|---|
| ID | 5613300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1813253 |
|---|
| End bp | 1814254 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640932390 |
|---|
| Product | cytochrome c family protein |
|---|
| Protein accession | YP_001473263 |
|---|
| Protein GI | 157374663 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01905] doubled CXXCH domain
[TIGR03508] decaheme c-type cytochrome, DmsE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.462693 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA CAAACAAATT TAAAACACTA TCTATGGCAG TTTTACCTGC CCTTATGGTA
TCGGCAGTAC TCTCACTCGG TTTTGCATCG ACTGCAACAG CCTCTAAGTG GGATGCCAAG
ATGACGCCTG ATGAAGTTGA AGCGACACTG GACAAGAAAT TTGCCGAAGG TAAGTACTCA
CCTAAAGGCG CCGACTCTTG CTTAATGTGT CACCGTAAGT CTGAAAAAGT CATGGATATC
TTCAAAGGTG TTCACGGCTC TATTGATTCG AGCAAGAGCC CTATGGCGGG ACTGCAGTGC
GAATCGTGTC ACGGCCCTAT GGGTAAGCAT AACAAGGGTG GCAAAGAGCC GATGATCGCC
TTCGGTCCAG ACTCGACTCT CTCTGCCGAG AAGCAAAACA GTGTCTGCAT GAGCTGTCAC
CAGGATGATA AGCGTATGGC GTGGAATGGT GGACACCATG ACAATGCCGA GGTTGCTTGT
GCCTCTTGTC ACTCGGTTCA CACCGACAAA GATCCGGTGC TTTCTAAAAA CACTGAGATG
GAAGTCTGTA CCAGCTGTCA TACCAAACAG AAAGCGGACA TGAACAAGCG CTCCAGCCAT
CCAATGAAAT GGGCTCAAAT GGTGTGTAGC GATTGTCATA ATCCACACGG CACGCTAGCC
GATTCAGATC TGGTTAAGCC AAGCGTCAAC GAGACATGTT ATTCATGTCA CGCTGAGAAA
CGTGGCCCAA AGTTGTGGGA GCATGCACCC GTAACTGAAG ATTGTGTGAC TTGTCACAAC
CCACACGGCT CAGTCAATGA AGGCATGCTC AAGACTCGTG CTCCACAACT TTGTCAGCAG
TGTCACGCCA GCGATGGCCA TGCAAGCAGA GCGAACTTCG GTAACACTGG TCAAGGTTCG
AGTGTCGGTG ATAATGCCTT CACGGGTGGC AACAGTTGCT TAAATTGTCA CAGCAAGATC
CATGGTTCTA ACCATCCATC TGGCAAGCTG TTCCAGCGTT AA
|
|---|
| Protein sequence | MKITNKFKTL SMAVLPALMV SAVLSLGFAS TATASKWDAK MTPDEVEATL DKKFAEGKYS
PKGADSCLMC HRKSEKVMDI FKGVHGSIDS SKSPMAGLQC ESCHGPMGKH NKGGKEPMIA
FGPDSTLSAE KQNSVCMSCH QDDKRMAWNG GHHDNAEVAC ASCHSVHTDK DPVLSKNTEM
EVCTSCHTKQ KADMNKRSSH PMKWAQMVCS DCHNPHGTLA DSDLVKPSVN ETCYSCHAEK
RGPKLWEHAP VTEDCVTCHN PHGSVNEGML KTRAPQLCQQ CHASDGHASR ANFGNTGQGS
SVGDNAFTGG NSCLNCHSKI HGSNHPSGKL FQR
|
|---|
| |