| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1520 |
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| Symbol | |
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| ID | 5613216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1808366 |
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| End bp | 1809337 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932386 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001473259 |
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| Protein GI | 157374659 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCCGGTA AGACACTTCC TCCCTATCCT TACTCCTCTA TTCTGAATCT TGAGATAGAG
GAGATCGACT GGCAGCGTTG GCAGCGCTTA GTCAATACCG TCGCTGACAT GTTTAATGCT
CCTGCAACAT TTATTAATCA GGCGAATCTG AAGGGCATTG AAGTCATCAT TGCCTCAGAA
AAGCCTGAGA CCCATTATCA CCCCGGAAGC AGCAATTTAA ACAGTAATAT CTATTGTCAC
CAAGTGGTTA AAAATCACTC CAAACTGTAC GTCCGGGATG CTAAGTTAGA TCCACAATGG
AGTGATAACC CTGAATATAC AGAAGATAAT TATGTCTCAT ATCTTGGACT CCCCATCTCC
TGGCCCGATG GTAGTGTGTT TGGCACACTT TGCGTATTAG ACACTAAGGT AACCAATTAC
CCTCAAACCT ACATCAATGC CCTTGGGGTA ATAAAAGAGG TGGTAGATAG CGATCTACGT
CATCTGTATA AAGAGAACCA ACTACTCACG CTGAGCTATA CGGATCCACT CACGCAAGTT
TTCAATCGTC GCGGTTTTAG CGACCTGCTG CGAAGTACAC AGGAGCTGGC TCATCGACTG
AACCGAAAAC TCATCTTACT CTACTTCGAT CTCGATGAGT TCAAGCATGC CAACGACACC
TTCGGCCATG ATATCGGCGA CATCATGCTT AAAACGTTTG CCAAAACACT CAAAAAAAAT
AGCCGTAGCT GTGATCTCGT TGCCAGATGG GGAGGAGATG AGTTTATCGT GTTGATCCAT
GCAGAGAGTG AGAGCTGTGT AAATCTGTTT ACCAATAGAA TGAACGACCT ATTAACGGAG
CAAAACCTGC AACCGGAGAT CAAGTACTCC TATGGATATG CGGTGATAAA CCCTGATGAA
AAAATGGAAT TAGAAGATCT ACTCAAAATT GCAGATGATT ATATGTATCA AAATAAACTA
AATAAAAAGT GA
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| Protein sequence | MPGKTLPPYP YSSILNLEIE EIDWQRWQRL VNTVADMFNA PATFINQANL KGIEVIIASE
KPETHYHPGS SNLNSNIYCH QVVKNHSKLY VRDAKLDPQW SDNPEYTEDN YVSYLGLPIS
WPDGSVFGTL CVLDTKVTNY PQTYINALGV IKEVVDSDLR HLYKENQLLT LSYTDPLTQV
FNRRGFSDLL RSTQELAHRL NRKLILLYFD LDEFKHANDT FGHDIGDIML KTFAKTLKKN
SRSCDLVARW GGDEFIVLIH AESESCVNLF TNRMNDLLTE QNLQPEIKYS YGYAVINPDE
KMELEDLLKI ADDYMYQNKL NKK
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