| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1505 |
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| Symbol | |
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| ID | 5610714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1790478 |
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| End bp | 1792484 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932371 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001473244 |
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| Protein GI | 157374644 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCTGTA TCAACTATGT GCTAATCTTC GAGAGTTTTA TGTCGATCAA AACCAGTATT
AATCCTCCTG TTTTTTTCTC TTCCGTTTTT ATCATAGCGT TAATGGTGTT TGTCGGGGCT
ATCTGGCCAC AGCAGGCACA AATTGTATTT AAGTCAGCCC AGTCTTGGTT CGAACTTAAG
GCCGGTTGGC TTTACATCTT AGGTGTTGCC ATCTTCCTTA TCTTTATCAT CTTTGTGATG
GTGAGTCGTT TCGGTGATAT TAAGTTAGGA CCGGATCACG CCGAACCCGA TTACAGCTAC
AAAAGCTGGA TAGCCATGCT GTTTTCAGCC GGCATGGGCA TCGGCTTGAT GTTCTTTGGT
GTTGCCGAAC CTGTTATGCA CTATTTAGCT CCACCGGATG CGACTCCTGA GACGATTCAG
GCCGCTAAAG ATGCAATGAA GATCACTTTC TTCCATTGGG GGATCCATGC CTGGGCCATC
TATGCGGTTG TCGCACTTAG TCTGGCTTAT TTCTCCTATC GGCATAAGCT ACCTCTACTG
CCACGAAGTG CCCTTTATCC TCTGATTGGT GAACGTATCT ATGGGCCTAT AGGGCATGCT
GTCGATACAT TTGCCGTTAT CGGAACCATG TTTGGTGTGG CCACATCTCT GGGTTTTGGT
GTGTTACAAG TTAACTCAGG GCTAAACTAT CTGCTCGGTG TGCCGGTAAA TGCTTACGTC
CAAGTTGGGC TTATTATCGC GATTTCATTG ATTGCGACAC TCTCAGTTTT CTCCGGGTTG
GATAAAGGAG TTAAACGACT CAGTGAATTG AACTTAGGTT TAGCAATATT ACTACTAATT
TTTGTGCTGA TCTTTGGACC TACCGTTGAG CTACTACAGG CCTTTGTACA AAATACCGGA
GGATATTTGA GTGATATTGT CGGTAAAACT TTTAACTTGT ATGCCTACGA GCAGAAAAAT
GATTGGATTG GGGGTTGGAC CTTGCTCTAC TGGGGCTGGT GGATCTCATG GTCCCCATTT
GTAGGAACCT TTATTGCCAG AGTTTCCCGT GGCCGTACCA TCAGAGAGTT TTTGGTGGGT
GTGTTATTCG TACCTACTGC GTTTACCTTC TTGTGGATGA CAGTATTTGG TAACACGGCG
ATAGATGCGA TCATGGACCA TGGTGCAAGC TATCTGACGG AAGCTGTTTC AAGTGATGTC
TCCGTTGCCT TGTTTGTCTT TTTTGAGCAT ATGCCATTTT CCACTCTGCT ATCGACGATA
GCCTTGTGTC TGGTTATCAC CTTCTTTGTT ACTTCGTCCG ATTCGGGGTC ACTGGTTATC
GATAACCTAA CATCGGGTGG CGATCATGAA GCACCTGTAT GGCAGCGTGT CTTTTGGGCG
CTACTTCAGG GCGTTGTCGC TTCTGTTTTA TTGCTTGCCG GCGGCCTGCA AGCACTACAA
ACGGTAGCGA TTGCCAGTGC ATTGCCTTTT TTGTTAGTCA TGCTCTTGAT GTGTTTTGGT
TTGTACAAGG CACTCCAGGA TGACTGGCTT AAGATCAACA GCGTGCAGCT TCATAATACG
AGTGTACAGT TCACCAAAAC TAACGTGAAT TGGGAAGACC ATATCGATGT GTTAGTGTCT
CATCCGAGTA AAGAAGATGC ACAAAATTTT CTCGACAATG TGGCCACGCC GGCGCTGACT
AAGGTGTGTA AGAGCTTTAT CAGTAAAGAG ATCCCTGCAG AGTTGTTGCA TTTTGAAAAT
CGTATTCGTT TCGTTATCGC CAACGAGGAA TATGATGACT TTGCCTATGG TCTACGGGTA
CGTGCATTTA CCATCATCAA CCCAATCGAG AGTGAACTCG ATGAAGGTGA AACCGATTAT
TATCGGGTCG AGGTGTTCCT TGAGCATGGC GGTCAACATT ATGATGTGAT GGGCTTCACT
CAAGATCAGA TCTTGGCAGA TGTGGTGACC CAGTATGAAA AGTATCTGCA TTACCTGCAC
CTATCCAGTT CAGAATACTT AGGTTAA
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| Protein sequence | MSCINYVLIF ESFMSIKTSI NPPVFFSSVF IIALMVFVGA IWPQQAQIVF KSAQSWFELK
AGWLYILGVA IFLIFIIFVM VSRFGDIKLG PDHAEPDYSY KSWIAMLFSA GMGIGLMFFG
VAEPVMHYLA PPDATPETIQ AAKDAMKITF FHWGIHAWAI YAVVALSLAY FSYRHKLPLL
PRSALYPLIG ERIYGPIGHA VDTFAVIGTM FGVATSLGFG VLQVNSGLNY LLGVPVNAYV
QVGLIIAISL IATLSVFSGL DKGVKRLSEL NLGLAILLLI FVLIFGPTVE LLQAFVQNTG
GYLSDIVGKT FNLYAYEQKN DWIGGWTLLY WGWWISWSPF VGTFIARVSR GRTIREFLVG
VLFVPTAFTF LWMTVFGNTA IDAIMDHGAS YLTEAVSSDV SVALFVFFEH MPFSTLLSTI
ALCLVITFFV TSSDSGSLVI DNLTSGGDHE APVWQRVFWA LLQGVVASVL LLAGGLQALQ
TVAIASALPF LLVMLLMCFG LYKALQDDWL KINSVQLHNT SVQFTKTNVN WEDHIDVLVS
HPSKEDAQNF LDNVATPALT KVCKSFISKE IPAELLHFEN RIRFVIANEE YDDFAYGLRV
RAFTIINPIE SELDEGETDY YRVEVFLEHG GQHYDVMGFT QDQILADVVT QYEKYLHYLH
LSSSEYLG
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