Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1501 |
Symbol | |
ID | 5610815 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1784230 |
End bp | 1786488 |
Gene Length | 2259 bp |
Protein Length | 752 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932367 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001473240 |
Protein GI | 157374640 |
COG category | [R] General function prediction only |
COG ID | [COG4590] ABC-type uncharacterized transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000210465 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAACTC AGGTAATAAA ACCTGATCCA AAGGCTAAAA ACCTACTGAT GAGTAAAGGC TCGAGTAGAA GGGCTATTCA GGACAGATTA ACCCAAGTGG GGGTGACGAT TGGGGGGACG ATGGTATTTG TCGCTCTGCT ATTGATCTTC TTTTATCTGC TATACGTTGT TAAACCAATC TTCGATGGCG CCGAAGTCGC TCCACTGGTC AGTGTCGATG TTGCGAATGA TACGAGTCCG GCATTGATGG TTGGCAGTGA TGAACAAAAT GAGATCATCT ACCGCGTATC AGAGTCTGGT CGGGTCGATT TTTATGATGT GAAAAATGGC CAGTTAATCG AAACACAAAC GCTTTCTCTT CCTCAAGGTG TAGAGGTTGT TGGCAGTGCG TCTTCGGTGG TCAGTGAGCA ACGATTTGCC TTGGGCCTAA GTAATGGTCA GGTGTTACTT GCAGGTATCG ACTTTGGCGT GACCTATCCG AATAACCAAC GCGTGATCAC TCCGAACTTA AGATACCCAG CCGGAAGAGA GCCGTTCGCT GTCGATGAGA AGGGCTCACC GCTCAATAAT CTGATCTTTG GTTATAGCAG TGACAAGATG AGCTTCGCCT ATCAAGACCA GGATGATCTT TGGCATCTCA CCCGCCAGGA AGGCGAAGAG AACATGATGA CCGAAGAGGT TGAATGGATT GCGACAACGG GCTTGATCAA TGATGCGCCG CAGGATGTCC AGCAAAGATT AATGACTCCT GATCAGCGTC AGCTTCTATT GAGAAGCGGT GATAAGCTGT TTATCTATAA TATTCGTGAC GCCGATGATA TCTCCTTACA ACAAGTGCTT GAGTTAGAAT TGGCTAAGGC GAAGGTCACC GATGTGAGTC TACTTGCCGG GGCGAGCTCT ATCTTGGTTA GCTATGATTC GGGCCTGGTT GCGCAGTACT TTCAAGTCAA TGGTGAGCGG GGGCGTCAAT ACCGGGAGAT CCGTTCATTT GACACTTCCT CATCGGTTGC CAGCGTTGCC AGCGAATTTT ATCGAAAGAG CTTCGTGACA GTGAGTGAAA AAGGTGATCT GACACTCCTG TATACCACCA GTGAACGTGA GTTATTTTCA GAGCCTTTTG GCCTTAACAA TCCTAAAAAA ATCGGTTTCA GTCCAAGAGC TAACGCGCTT GTGGTGGAGG CTGGATCTAA ACTGCATCTA TTTACCGTTG AAAACTCTCA TCCTGAGGTT TCCTGGAGTG CGATGTGGAG TAAGGTTTGG TATGAAGACT ATCCGGAACC TAAATATGTA TGGCAATCGA CATCCGGTTC CGATGACTTT GAGGCTAAGT TAAGTCTGAT GCCATTGGCT TTCGGAACCA TGAAGGCCGC GCTTTATGCC ATGCTGTTTG CCACTCCACT GGCGATTGCC GGCGCGATCT ATACCGCCTA TTTCATGTCT CCAAAGATAC GTTCCATAGT GAAGCCGACG ATTGAGATAA TGGAAGCTTT ACCTACCGTG ATCTTGGGTT TCTTAGCGGG ACTCTGGCTT GCGCCTCTGA TTGAAGACAA TTTGCCGGGT ATTTTGGTGT TGCTCTTGCT GCTACCTTTA TCGATTCTGG CCACGGCATT TGCCTGGCAT AACCTGCCTG GAAAGTGGAA ACAGCGTCTG CCTGAAATTT ATCAGGAACT GATGCTATTG CCTGTGATTA TCTTTATCGG TTGGTTCTCC TTCGCTATTA GTCCCGCCAT CGAAGTTGCC TTCTTCCATG GTGACTCGCG TATGTTTATT ACTAATGAAC TGGGGATCAC ATTCGATCAG CGTAATGCGT TAGTTGTCGG TATCGCTATG GGGTTCGCGG TTATTCCGAC TATCTTCTCG ATTGCCGAAG ACGCTGTGTT CTCAGTGCCT CGCCACCTGT CAAATGGTAG CTTAGCCTTA GGCGCGACTA ACTGGCAGAC CTTGACCCGA GTGGTCTTGC TTACGGCGAG TCCGGGTATC TTCTCTGCGA TAATGATGGG TCTGGGTCGC GCGGTGGGAG AGACCATGAT CGTGCTTATG GCAACGGGTA ATACTGCCAT CATGGAATGG AGTGTATTCG AAGGTATGCG GACACTGGCC GCTAACATTG CTGTAGAGAT GCCTGAGTCG GCGATTGGCA GTTCACACTA CCGGGTGCTT TTCCTTGCAG CCTTTGTTCT GTTTATTTTC ACCTTCTTCT TCAACACCAT AGCTGAAGTG GTGAGACAGC GTCTGCGTGA ACGTTATAGT TCACTGTAA
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Protein sequence | MVTQVIKPDP KAKNLLMSKG SSRRAIQDRL TQVGVTIGGT MVFVALLLIF FYLLYVVKPI FDGAEVAPLV SVDVANDTSP ALMVGSDEQN EIIYRVSESG RVDFYDVKNG QLIETQTLSL PQGVEVVGSA SSVVSEQRFA LGLSNGQVLL AGIDFGVTYP NNQRVITPNL RYPAGREPFA VDEKGSPLNN LIFGYSSDKM SFAYQDQDDL WHLTRQEGEE NMMTEEVEWI ATTGLINDAP QDVQQRLMTP DQRQLLLRSG DKLFIYNIRD ADDISLQQVL ELELAKAKVT DVSLLAGASS ILVSYDSGLV AQYFQVNGER GRQYREIRSF DTSSSVASVA SEFYRKSFVT VSEKGDLTLL YTTSERELFS EPFGLNNPKK IGFSPRANAL VVEAGSKLHL FTVENSHPEV SWSAMWSKVW YEDYPEPKYV WQSTSGSDDF EAKLSLMPLA FGTMKAALYA MLFATPLAIA GAIYTAYFMS PKIRSIVKPT IEIMEALPTV ILGFLAGLWL APLIEDNLPG ILVLLLLLPL SILATAFAWH NLPGKWKQRL PEIYQELMLL PVIIFIGWFS FAISPAIEVA FFHGDSRMFI TNELGITFDQ RNALVVGIAM GFAVIPTIFS IAEDAVFSVP RHLSNGSLAL GATNWQTLTR VVLLTASPGI FSAIMMGLGR AVGETMIVLM ATGNTAIMEW SVFEGMRTLA ANIAVEMPES AIGSSHYRVL FLAAFVLFIF TFFFNTIAEV VRQRLRERYS SL
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