Gene Ssed_1501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1501 
Symbol 
ID5610815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1784230 
End bp1786488 
Gene Length2259 bp 
Protein Length752 aa 
Translation table11 
GC content48% 
IMG OID640932367 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001473240 
Protein GI157374640 
COG category[R] General function prediction only 
COG ID[COG4590] ABC-type uncharacterized transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000210465 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAACTC AGGTAATAAA ACCTGATCCA AAGGCTAAAA ACCTACTGAT GAGTAAAGGC 
TCGAGTAGAA GGGCTATTCA GGACAGATTA ACCCAAGTGG GGGTGACGAT TGGGGGGACG
ATGGTATTTG TCGCTCTGCT ATTGATCTTC TTTTATCTGC TATACGTTGT TAAACCAATC
TTCGATGGCG CCGAAGTCGC TCCACTGGTC AGTGTCGATG TTGCGAATGA TACGAGTCCG
GCATTGATGG TTGGCAGTGA TGAACAAAAT GAGATCATCT ACCGCGTATC AGAGTCTGGT
CGGGTCGATT TTTATGATGT GAAAAATGGC CAGTTAATCG AAACACAAAC GCTTTCTCTT
CCTCAAGGTG TAGAGGTTGT TGGCAGTGCG TCTTCGGTGG TCAGTGAGCA ACGATTTGCC
TTGGGCCTAA GTAATGGTCA GGTGTTACTT GCAGGTATCG ACTTTGGCGT GACCTATCCG
AATAACCAAC GCGTGATCAC TCCGAACTTA AGATACCCAG CCGGAAGAGA GCCGTTCGCT
GTCGATGAGA AGGGCTCACC GCTCAATAAT CTGATCTTTG GTTATAGCAG TGACAAGATG
AGCTTCGCCT ATCAAGACCA GGATGATCTT TGGCATCTCA CCCGCCAGGA AGGCGAAGAG
AACATGATGA CCGAAGAGGT TGAATGGATT GCGACAACGG GCTTGATCAA TGATGCGCCG
CAGGATGTCC AGCAAAGATT AATGACTCCT GATCAGCGTC AGCTTCTATT GAGAAGCGGT
GATAAGCTGT TTATCTATAA TATTCGTGAC GCCGATGATA TCTCCTTACA ACAAGTGCTT
GAGTTAGAAT TGGCTAAGGC GAAGGTCACC GATGTGAGTC TACTTGCCGG GGCGAGCTCT
ATCTTGGTTA GCTATGATTC GGGCCTGGTT GCGCAGTACT TTCAAGTCAA TGGTGAGCGG
GGGCGTCAAT ACCGGGAGAT CCGTTCATTT GACACTTCCT CATCGGTTGC CAGCGTTGCC
AGCGAATTTT ATCGAAAGAG CTTCGTGACA GTGAGTGAAA AAGGTGATCT GACACTCCTG
TATACCACCA GTGAACGTGA GTTATTTTCA GAGCCTTTTG GCCTTAACAA TCCTAAAAAA
ATCGGTTTCA GTCCAAGAGC TAACGCGCTT GTGGTGGAGG CTGGATCTAA ACTGCATCTA
TTTACCGTTG AAAACTCTCA TCCTGAGGTT TCCTGGAGTG CGATGTGGAG TAAGGTTTGG
TATGAAGACT ATCCGGAACC TAAATATGTA TGGCAATCGA CATCCGGTTC CGATGACTTT
GAGGCTAAGT TAAGTCTGAT GCCATTGGCT TTCGGAACCA TGAAGGCCGC GCTTTATGCC
ATGCTGTTTG CCACTCCACT GGCGATTGCC GGCGCGATCT ATACCGCCTA TTTCATGTCT
CCAAAGATAC GTTCCATAGT GAAGCCGACG ATTGAGATAA TGGAAGCTTT ACCTACCGTG
ATCTTGGGTT TCTTAGCGGG ACTCTGGCTT GCGCCTCTGA TTGAAGACAA TTTGCCGGGT
ATTTTGGTGT TGCTCTTGCT GCTACCTTTA TCGATTCTGG CCACGGCATT TGCCTGGCAT
AACCTGCCTG GAAAGTGGAA ACAGCGTCTG CCTGAAATTT ATCAGGAACT GATGCTATTG
CCTGTGATTA TCTTTATCGG TTGGTTCTCC TTCGCTATTA GTCCCGCCAT CGAAGTTGCC
TTCTTCCATG GTGACTCGCG TATGTTTATT ACTAATGAAC TGGGGATCAC ATTCGATCAG
CGTAATGCGT TAGTTGTCGG TATCGCTATG GGGTTCGCGG TTATTCCGAC TATCTTCTCG
ATTGCCGAAG ACGCTGTGTT CTCAGTGCCT CGCCACCTGT CAAATGGTAG CTTAGCCTTA
GGCGCGACTA ACTGGCAGAC CTTGACCCGA GTGGTCTTGC TTACGGCGAG TCCGGGTATC
TTCTCTGCGA TAATGATGGG TCTGGGTCGC GCGGTGGGAG AGACCATGAT CGTGCTTATG
GCAACGGGTA ATACTGCCAT CATGGAATGG AGTGTATTCG AAGGTATGCG GACACTGGCC
GCTAACATTG CTGTAGAGAT GCCTGAGTCG GCGATTGGCA GTTCACACTA CCGGGTGCTT
TTCCTTGCAG CCTTTGTTCT GTTTATTTTC ACCTTCTTCT TCAACACCAT AGCTGAAGTG
GTGAGACAGC GTCTGCGTGA ACGTTATAGT TCACTGTAA
 
Protein sequence
MVTQVIKPDP KAKNLLMSKG SSRRAIQDRL TQVGVTIGGT MVFVALLLIF FYLLYVVKPI 
FDGAEVAPLV SVDVANDTSP ALMVGSDEQN EIIYRVSESG RVDFYDVKNG QLIETQTLSL
PQGVEVVGSA SSVVSEQRFA LGLSNGQVLL AGIDFGVTYP NNQRVITPNL RYPAGREPFA
VDEKGSPLNN LIFGYSSDKM SFAYQDQDDL WHLTRQEGEE NMMTEEVEWI ATTGLINDAP
QDVQQRLMTP DQRQLLLRSG DKLFIYNIRD ADDISLQQVL ELELAKAKVT DVSLLAGASS
ILVSYDSGLV AQYFQVNGER GRQYREIRSF DTSSSVASVA SEFYRKSFVT VSEKGDLTLL
YTTSERELFS EPFGLNNPKK IGFSPRANAL VVEAGSKLHL FTVENSHPEV SWSAMWSKVW
YEDYPEPKYV WQSTSGSDDF EAKLSLMPLA FGTMKAALYA MLFATPLAIA GAIYTAYFMS
PKIRSIVKPT IEIMEALPTV ILGFLAGLWL APLIEDNLPG ILVLLLLLPL SILATAFAWH
NLPGKWKQRL PEIYQELMLL PVIIFIGWFS FAISPAIEVA FFHGDSRMFI TNELGITFDQ
RNALVVGIAM GFAVIPTIFS IAEDAVFSVP RHLSNGSLAL GATNWQTLTR VVLLTASPGI
FSAIMMGLGR AVGETMIVLM ATGNTAIMEW SVFEGMRTLA ANIAVEMPES AIGSSHYRVL
FLAAFVLFIF TFFFNTIAEV VRQRLRERYS SL