Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1500 |
Symbol | |
ID | 5610363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1783547 |
End bp | 1784047 |
Gene Length | 501 bp |
Protein Length | 166 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640932366 |
Product | amino acid-binding ACT domain-containing protein |
Protein accession | YP_001473239 |
Protein GI | 157374639 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2716] Glycine cleavage system regulatory protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000613254 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTACGAT ACTTAGTCAC CCTACAGGTA GCCGATAGAA AAGGGTTAGT CGAACAGATC GCGCACGCGG TTAGCCGTCA TGGTGGTAAT TGGCTCGATT CTGAACTTCG TCATATCGAC GGAATTTTTG CGGCCATACT CCTTTTAGAG GTCCCGGCTT CTAACTGGGA TATTCTGGCC GAAAACTTAG AGTGTATAGA AGGTTTAAGC ATGACCTATG CTAAAACCAA TAAAAACCCA CATCAGATTA AACACTTTAG TTTTTCACTC GTGGCCTATG ACAGACCAGG CTTAGTACAT GATATTTCAA ACAAGATCAG TGCACTTGGA ATTAATATTG AACACTTCAG CACGCGTTAT GAGAGCGCGA GCCACACGGG TGTGCCCCTC TTCAGAGCTA ATTTCGATCT TGGAATAAAA ACCCCCGAAC AAGAGGAGCT GCTTTCGAGT GCGCTATATG AAATAGGTGA TGATGTGGTT CTGGATAAAA TCAGCACTTA A
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Protein sequence | MLRYLVTLQV ADRKGLVEQI AHAVSRHGGN WLDSELRHID GIFAAILLLE VPASNWDILA ENLECIEGLS MTYAKTNKNP HQIKHFSFSL VAYDRPGLVH DISNKISALG INIEHFSTRY ESASHTGVPL FRANFDLGIK TPEQEELLSS ALYEIGDDVV LDKIST
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