Gene Ssed_1500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1500 
Symbol 
ID5610363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1783547 
End bp1784047 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content44% 
IMG OID640932366 
Productamino acid-binding ACT domain-containing protein 
Protein accessionYP_001473239 
Protein GI157374639 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2716] Glycine cleavage system regulatory protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000613254 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTACGAT ACTTAGTCAC CCTACAGGTA GCCGATAGAA AAGGGTTAGT CGAACAGATC 
GCGCACGCGG TTAGCCGTCA TGGTGGTAAT TGGCTCGATT CTGAACTTCG TCATATCGAC
GGAATTTTTG CGGCCATACT CCTTTTAGAG GTCCCGGCTT CTAACTGGGA TATTCTGGCC
GAAAACTTAG AGTGTATAGA AGGTTTAAGC ATGACCTATG CTAAAACCAA TAAAAACCCA
CATCAGATTA AACACTTTAG TTTTTCACTC GTGGCCTATG ACAGACCAGG CTTAGTACAT
GATATTTCAA ACAAGATCAG TGCACTTGGA ATTAATATTG AACACTTCAG CACGCGTTAT
GAGAGCGCGA GCCACACGGG TGTGCCCCTC TTCAGAGCTA ATTTCGATCT TGGAATAAAA
ACCCCCGAAC AAGAGGAGCT GCTTTCGAGT GCGCTATATG AAATAGGTGA TGATGTGGTT
CTGGATAAAA TCAGCACTTA A
 
Protein sequence
MLRYLVTLQV ADRKGLVEQI AHAVSRHGGN WLDSELRHID GIFAAILLLE VPASNWDILA 
ENLECIEGLS MTYAKTNKNP HQIKHFSFSL VAYDRPGLVH DISNKISALG INIEHFSTRY
ESASHTGVPL FRANFDLGIK TPEQEELLSS ALYEIGDDVV LDKIST