| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1491 |
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| Symbol | |
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| ID | 5613002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1771527 |
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| End bp | 1772282 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932357 |
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| Product | putative ribonuclease HI |
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| Protein accession | YP_001473230 |
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| Protein GI | 157374630 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0328] Ribonuclease HI |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0175251 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAGA AGTTTTACGT AGTGTGGCAA GGCAGAGAAA CAGGGATCTT CACGACCTGG
GATCAGACTA AAAAGTTGGT CGATAAATTT CCGGGGGCAC GCTATAAATC TTTTCCCAGC
CAAGCCGAAG CCGAAGCGGC TTTTGGCAAG GGAGCAACAT CGACTCTTGC CAGAAAAACA
TCTCCTAAGC CAGCTTCGAC ACTAAAGAAG GCCAGCGCGC CTGAAAACAC CACAAAGTAT
GATGTAGAGA TATATACAGA TGGGGGCTGT GAACCCAACC CCGGAAAGGC CGGCTCAGGT
ATCGCCGTTT ACCGCAATGG TGAACTATCA GAGCTTTGGT ATGGACTCTA TAACGCCTTC
GGCACCAATA ACACCGCTGA GTTAAATGCG CTACATCAAG CGCTTCTAAT CGCTCAGGAC
AACCTTAAAC AAGGCAAGAG TGTTCATATC CTGAGTGACT CCCAATACTC CATTAACTGT
ATCACCAACT GGGCCTACGG TTGGAAGCAG AAAGGCTGGA AGAGAAAAAC TGCAGGTGAT
ATTAAAAACC TTGAAATAAT CCAGATATCC CACGCCATAT ATGAAGAGAT AAAAGAGAAG
CTCCAGATCT CGCATGTGGC GGCTCACGTG GGCATTGAAG GCAATGAGTT AGCCGACAGA
ATGTCGATAT ATGCTATCGA CCGGAAAGAC ACGCAGTTTT GCCGCTACCC CGAACCGATT
GAACTCGCAT CGATTCTAAG CCTGAGAGCT GGCTAA
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| Protein sequence | MAKKFYVVWQ GRETGIFTTW DQTKKLVDKF PGARYKSFPS QAEAEAAFGK GATSTLARKT
SPKPASTLKK ASAPENTTKY DVEIYTDGGC EPNPGKAGSG IAVYRNGELS ELWYGLYNAF
GTNNTAELNA LHQALLIAQD NLKQGKSVHI LSDSQYSINC ITNWAYGWKQ KGWKRKTAGD
IKNLEIIQIS HAIYEEIKEK LQISHVAAHV GIEGNELADR MSIYAIDRKD TQFCRYPEPI
ELASILSLRA G
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