| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1478 |
|---|
| Symbol | |
|---|
| ID | 5610693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1753553 |
|---|
| End bp | 1754479 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640932344 |
|---|
| Product | 3-hydroxyisobutyrate dehydrogenase |
|---|
| Protein accession | YP_001473217 |
|---|
| Protein GI | 157374617 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01692] 3-hydroxyisobutyrate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0583825 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0385806 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGTG TCGCATTTAT CGGGTTAGGG CATATGGGGG CGCCGATGGC TGCCAATTTA
GTTAAGGCTG GCTTAACGGT GCGTGTATTC GATCTGGTAC CCGAAACGAT AAAGTCACTT
ACGGATCTTG GCGCATTAGC GGCGAGCAGT GCCTGTGGAG CCGCTGCGGG CGCAGATGTC
GTTATCACCA TGCTTCCGGC CGGCAAACAT GTTCGTTCAC TTTACCTCGG CGAAAGCGGT
GGAGGTGAAG GCAAGGGGCT GATTGATGTG GTTGCAAAGG GCACCCTACT GATAGACTGC
TCAACCATCG ATGCTCAAAG TGCACAGGTA GTGGCGAAGT TTGCCGCCGA GAAAGAATTG
GAGTTTGTCG ATGCGCCTGT TTCGGGTGGA ACGGCTGGCG CGGCGGCGGG AACGCTCACC
TTTATCTGTG GCGGCAGTGA CACGGGCTTC GAGCAAGCTA AAAACATGCT AAGTAACATG
GGGGCGAACA TCTTTCACGC AGGTGGAGCG GGCGCGGGTC AGGTTGCCAA GATATGTAAT
AACATGTTGT TATCTGTCCT GATGGTCGGA ACCAGTGAAT CTTTGCAGAT GGGAATCGAT
CATGGTCTGG ACCCTAAGGT ATTATCTGAG ATAATGAAGG TAAGTAGTGG TGGTAATTGG
ACGCTGGATA AATATAATCC TTGTCCGGAC GTGATGGAAT CTGTGCCCTC ATCGAATGGC
TACCAAGGTG GCTTTATGGT GGATTTGATG GTTAAAGACC TTGGGTTATC CCAAGAGGCC
GCACTGCTTT CGAATTCAAG CACGCCGATG GGAGCCTTAG CGCGCAGTTT ATATGTTAAC
CATGCACGTC AGGGTAATGG GGAACGTGAT TTTTCCAGCA TTTTTGAACA GTTTACTAAT
TTAAAACAGA TTAAAAACAA AGGGTAA
|
|---|
| Protein sequence | MTSVAFIGLG HMGAPMAANL VKAGLTVRVF DLVPETIKSL TDLGALAASS ACGAAAGADV
VITMLPAGKH VRSLYLGESG GGEGKGLIDV VAKGTLLIDC STIDAQSAQV VAKFAAEKEL
EFVDAPVSGG TAGAAAGTLT FICGGSDTGF EQAKNMLSNM GANIFHAGGA GAGQVAKICN
NMLLSVLMVG TSESLQMGID HGLDPKVLSE IMKVSSGGNW TLDKYNPCPD VMESVPSSNG
YQGGFMVDLM VKDLGLSQEA ALLSNSSTPM GALARSLYVN HARQGNGERD FSSIFEQFTN
LKQIKNKG
|
|---|
| |