| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1474 |
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| Symbol | |
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| ID | 5610775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1748425 |
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| End bp | 1749930 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932340 |
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| Product | methylmalonate-semialdehyde dehydrogenase |
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| Protein accession | YP_001473213 |
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| Protein GI | 157374613 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00459347 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAACTC AAGTTAAGCA TTATATCGAC GGCCAATTTA TTCTGGGCCA GGGAGAGCAA
CAGATTTCGG TAACGAACCC TGCAAACAAC GAGCAGATAG CGGTGATCAA TAGTGCTACC
GTCGAAGAGG TGGAAACCGC CGTTGCCAGT GCCAAGGTAG CATTTAAAAG CTGGAAAGAG
GTGCCTGTAT CTGAACGTGC ACGTGTGATG TTTAACTATC AGCATCTTCT TAAAGCGCAC
CATGATGAGC TTGCGACGAT CTTAGCCCAG GAGACGGGCA AGACGTTTGA TGATGCCAAA
GGTGATGTGT GGCGCGGTAT AGAAGTGGCT GAGCATGCTT GTAATATAGC GACCCTAATG
ATGGGAGAAA CCGTCGAGAA CGTCGCTCGC AGTATCGATA CCTACAGCTA TACCCAGCCT
CTTGGTGTTT GCGCCGGTAT TACGCCGTTT AACTTCCCTG CCATGATCCC GTTATGGATG
TTCCCCCTCG CCATTGCATG CGGTAACACC TTCGTACTTA AGCCATCGGA ACAAGATCCA
ATGACGCCAC AACGTCTTGT CGAACTGTTC GAAGAGGCGG GTGCACCTAA GGGCGTACTG
CAACTGGTTC ATGGTGATAA GGTTGCCGTG GATGTGCTTC TTAATCATAA AGATATCAAA
GCCATCTCAT TTGTGGGATC TGTCGGTGTG GGCCAATACA TCTATAAGAC GGGTACCGAT
AATTTAAAGC GCGTCCAGGC CTTTGCCGGG GCAAAAAACC ACTGCGTCAT CATGCCAGAT
GCCAATAAGC AGCAAGTGAT AAATAACTTG GTCGGCGCCT CTGTCGGTGC GGCGGGTCAA
CGCTGTATGG CGTTGTCGGT TGCCGTGTTT GTTGGCGCTG CTAAAGAGTG GGTTCCTGAG
TTGAAAGCGG CGCTGGCTAA GGTTAAGCCC GGGCTTTGGG ACGATAAAAA TGCGGGTTAT
GGACCCGTGA TAAGCCCCGC GGCTAAGGCG CGCGTGCTAT CTCTCATCGA GCAGGGGAAA
AACGAGGGCG CCGAGTGTCT GCTCGATGGC TCAGAGTTTA CCGTATCCGG CTATGAGACA
GGTAACTGGA TTGGCCCGAC TATGTTCACC AAGGTGACTA CCGAGATGAG CATCTATAAA
GAGGAGATCT TCGGTCCTGT GCTGTGTTGC ATGGAAGCCG ATTCATTAGA GGAAGCTATC
GACATCGTCA ACGATAGCCC TTACGGCAAC GGCACCTCTA TCTTTACCGC CAGCGGTGCG
GCTGCCCGTA AGTACCAACA CGAAATCGAG GTGGGACAGG TGGGTATTAA TGTCCCCATT
CCGGTACCTC TGCCATTTTT CTCTTTCACC GGATGGAAGG GAAGCTTCTA TGGCGACCAA
CACGCTTATG GTAAGCAAGC CGTTCGCTTC TACACCGAAA CGAAAACCAT CACCTCTCGT
TGGTTCGAGT CGCAGATCTC GGAAGCCGAA CACGCAGCGC CAAATATGAC TATCGCGCTT
AAATAA
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| Protein sequence | MTTQVKHYID GQFILGQGEQ QISVTNPANN EQIAVINSAT VEEVETAVAS AKVAFKSWKE
VPVSERARVM FNYQHLLKAH HDELATILAQ ETGKTFDDAK GDVWRGIEVA EHACNIATLM
MGETVENVAR SIDTYSYTQP LGVCAGITPF NFPAMIPLWM FPLAIACGNT FVLKPSEQDP
MTPQRLVELF EEAGAPKGVL QLVHGDKVAV DVLLNHKDIK AISFVGSVGV GQYIYKTGTD
NLKRVQAFAG AKNHCVIMPD ANKQQVINNL VGASVGAAGQ RCMALSVAVF VGAAKEWVPE
LKAALAKVKP GLWDDKNAGY GPVISPAAKA RVLSLIEQGK NEGAECLLDG SEFTVSGYET
GNWIGPTMFT KVTTEMSIYK EEIFGPVLCC MEADSLEEAI DIVNDSPYGN GTSIFTASGA
AARKYQHEIE VGQVGINVPI PVPLPFFSFT GWKGSFYGDQ HAYGKQAVRF YTETKTITSR
WFESQISEAE HAAPNMTIAL K
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