Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1472 |
Symbol | |
ID | 5610773 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1745811 |
End bp | 1746755 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932338 |
Product | homoserine O-succinyltransferase |
Protein accession | YP_001473211 |
Protein GI | 157374611 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1897] Homoserine trans-succinylase |
TIGRFAM ID | [TIGR01001] homoserine O-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.244322 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000239725 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCGGTTA AAATTCCCGA TGATCTGCCT GCAGCAGAGA TCTTAGAGTC AGAAAATATC TTCGTTATGT CTGAGACTCG GGCTGCAAAT CAAGATATTC GTCCGATGAA AGTGCTAATT CTGAACTTGA TGCCGAATAA AATTGAGACC GAAACGCAAC TTTTGCGTTT ATTGGGTAAT ACTCCCCTGC AGGTCGATGT GGATCTGCTC AGAATTCACG ATAAAGAGTC CAGACACACC TCAATCGATC ACATGAATAA CTTTTATCGT GATTTCGAAG CCGTGCGTCA TAAAAACTAT GATGGCTTGA TAATCACCGG CGCACCCTTG GGTCAGGTTG AATTTGAAGA TGTAAGCTAT TGGGATCACA TTCGTGAAAT TATCGATTGG TCACAGCAAC ATGTCACCTC CGTGCTTTTT TTATGCTGGG CGGCCCACGC AGCTCTGTTT CATCTCTACG GACTGAACAG AAAGCTACTT AAGGAAAAAC GCTCCGGGGT ATTTCTGCAT AAGCGTACTC ACCGACATGT TCCTTTGCTA CGCGGATTCG ATGATGAGTT CCTGGCCCCG CATTCACGTT TTGCTGAAAT GGATGTCCAA CTTTTAAAAG CGCATCCGGC ACTGCAGGTG TTAACTGAAT CCGATGAGGC TGGCGCCTAT ATGGTGCTCA GTACGAATAA TCGTAACCTG TTTGTTATGG GGCACCCGGA GTACCAGAAA TCGACACTGA AAGATGAGTA TTTCCGCGAT CTGGGTGCAG GGTTACAACC TGAGATCCCG CAAAACTATT TCAGGCACAA TGATCCGGGC CAAGACCCCG TTGCTCGCTG GTATGGTCAT GGCAGCCTGT TGATCAGCAA TTGGCTTAAC TATTATGTTT ACCAGTTAAC CCCCTATAAC CTGGATGATA TGAGTGGCAT CACCCCTTGG GAAAATGAGG TTTAA
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Protein sequence | MPVKIPDDLP AAEILESENI FVMSETRAAN QDIRPMKVLI LNLMPNKIET ETQLLRLLGN TPLQVDVDLL RIHDKESRHT SIDHMNNFYR DFEAVRHKNY DGLIITGAPL GQVEFEDVSY WDHIREIIDW SQQHVTSVLF LCWAAHAALF HLYGLNRKLL KEKRSGVFLH KRTHRHVPLL RGFDDEFLAP HSRFAEMDVQ LLKAHPALQV LTESDEAGAY MVLSTNNRNL FVMGHPEYQK STLKDEYFRD LGAGLQPEIP QNYFRHNDPG QDPVARWYGH GSLLISNWLN YYVYQLTPYN LDDMSGITPW ENEV
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