| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1465 |
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| Symbol | |
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| ID | 5610861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1739898 |
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| End bp | 1740821 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932331 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001473204 |
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| Protein GI | 157374604 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00693631 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000745392 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGTTTTG ATAATAAAGT TGCTGTTATT ACCGGGGCCG GAACCGGATT GGGGCGTGCT
TATGCGATAG CGCTGGCAGA GCGTGGAGCC AACGTGGTTT TGATAGATTC GGGTTATGCG
GAAAGTGAAC CTAATTTAGC TGTGATGAAC TACTCCGGAC TCGAACGCTG TCACAAGGCG
GTTGAGGAGT TAGGTGCCAA CGCCTTGATG TTCAGGCTGG ATGTCAGTGA TGTCGATGGT
ATCAAACAAG CAGTCCAAGA GGTGGTCAAC CTATGGGGAC GCATCGATAT TCTGGTGAAT
AATGCCGGGG TTCACACACC TTGTGCGTTT GAAAATCTCA CAGTCGATAT GTGGCAAACT
CAATTAAATG TCGATCTCAG TGGCAGTTTT TATATGACTC AGGCCATCTG GCCTCTGATG
AAACGTCAGG GGTATGGCCG GATTATGATG AGCTGCGCCG CAAGTGGCTT ATATGGAGAT
ATGCACGAGA CCTCTTTCAG TGCCAGTAAA ATGGGCCTGA TTGGTCTGGT AAATAGTCTT
TATCTTGAAG GTGTAGAGCA TAATATTAAG GTCAACAGTC TTACTCCTCA TGCGTTAACC
GGTATGACTG AGGAGCGTTT AGCAGCATCT GTTAAGCCGC TATTTTCAAA GTCTTCTATT
ACCGCCAGCA TGCTGTTTCT ATGCAGCACC GATGCACCGA CTGGTCAGCA TCTGCTCACG
GCAGCCGGCA GTGTTAGTCA CGGTCAGTTT ACCGAGTTTA AACCCACCTA TTTTGAAGCC
GATACCTGCA AACCTGAAAC CTTGCTTAGC AGCTGGGAAC AGATCCATCA TGCGCTTCCG
GTTAATTTAC ATAAAAGTGG CGAGGATCAG GTGTTGGCCT GGGCGCGGCG TGGTGCAGCG
GAAAGGCACA TAGTCATCGA ATGA
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| Protein sequence | MRFDNKVAVI TGAGTGLGRA YAIALAERGA NVVLIDSGYA ESEPNLAVMN YSGLERCHKA
VEELGANALM FRLDVSDVDG IKQAVQEVVN LWGRIDILVN NAGVHTPCAF ENLTVDMWQT
QLNVDLSGSF YMTQAIWPLM KRQGYGRIMM SCAASGLYGD MHETSFSASK MGLIGLVNSL
YLEGVEHNIK VNSLTPHALT GMTEERLAAS VKPLFSKSSI TASMLFLCST DAPTGQHLLT
AAGSVSHGQF TEFKPTYFEA DTCKPETLLS SWEQIHHALP VNLHKSGEDQ VLAWARRGAA
ERHIVIE
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