| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1452 |
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| Symbol | |
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| ID | 5610885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1722727 |
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| End bp | 1723383 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932318 |
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| Product | 3-oxoacid CoA-transferase |
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| Protein accession | YP_001473191 |
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| Protein GI | 157374591 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2057] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit |
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| TIGRFAM ID | [TIGR02428] 3-oxoacid CoA-transferase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00341898 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCATTAT CCAGAGAACA ACTCGCACAA CGTGTAGCCC AGGAACTTAA AGATGGCTTT
TACGTTAATT TAGGCATAGG TATTCCCACC TTAGTGGCTA ACTATATCCC ACAAGATATA
GAAGTCATGC TGCAATCTGA GAATGGACTA CTTGGCATGG GAGAATTTCC CACCGAAGAG
ACCATAGATG CAGATCTGAT TAACGCTGGA AAACAGACGG TCACGGCCGT CGATGGCGCC
TCTTTCTTCT CATCGGCAGA AAGCTTCGCC ATGATCCGCG GCGGTCATGT GGATCTTACC
GTATTGGGTG CCTTCGAGGT TGACGAGCAG GGCTCGATCG CGTCATGGAT GATCCCCGGA
AAGCTTATCA AGGGGATGGG CGGTGCCATG GACCTGGTCG CTGGTGCAGA CAATATTATC
GTCACCATGA TGCATGCCGA TAAAAAGGGT AACTCGAAGC TACTGCCTAA GTGCGAGCTG
CCCCTGACAG GTTTTGGCTG CATCAAGCGC GTACTAACCG ACTTAGCTTT CATGGAGATT
AAAGATGGTG CATTCCATCT ATTAGAGCGT GCTCCAGGCG TTAGCGTTGA AGAGATCGTG
GCTAAGACAG CAGGTAAACT TATCGTCCCT GAACATGTAC CAGAGATGAA GTTCTAA
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| Protein sequence | MALSREQLAQ RVAQELKDGF YVNLGIGIPT LVANYIPQDI EVMLQSENGL LGMGEFPTEE
TIDADLINAG KQTVTAVDGA SFFSSAESFA MIRGGHVDLT VLGAFEVDEQ GSIASWMIPG
KLIKGMGGAM DLVAGADNII VTMMHADKKG NSKLLPKCEL PLTGFGCIKR VLTDLAFMEI
KDGAFHLLER APGVSVEEIV AKTAGKLIVP EHVPEMKF
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