| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1451 |
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| Symbol | |
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| ID | 5610884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1721765 |
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| End bp | 1722343 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932317 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001473190 |
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| Protein GI | 157374590 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00256419 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATATA CGATTGTGAG CTCAAATAAA CTACAGCAAG GTTTTACCCT GATTGAATTG
GTCATAGTGA TCATTATTCT GGGCATATTA AGTGTCATCG CAGCGCCTAA GTTTCTCTCT
TTGAGTAGCG AAGCACAGAC ATCTAGCCTC GAAGGAGTTG CAGGTTCTAT CGCCTCGATG
AATCAGATAG TGCACAGTAA AACCCAGATC GACGGCATCG CTGATAAGCA AGACTGTGAT
GGGACATGTA ACAACCATCC GAACTGGGAT AGAAACGTAG GTTACTTCTA TGTAGATGTA
TCGGGCACCC GTCTGTACGT ATCAAGTGGC TACCCGATGG CAGCAGGAAC CTCTCAATCA
GATACCATAG TAGAGGATAA CTTCACAACG GTTATGGGAT TATCCGACGA AGATTTTGTA
TTCGGCACAG GTGCTAACGG CTCATTTGCT GCCGTCCCCA AGAAATTTGC CGACAAGTTA
GCAGATATCC AAAGTGAGAA GTTCAAATGC CACGTCGAAT ATCGCTCTCC GGTTCCAGCC
TATAGCTATT ATGTTCGTGC CGTCACCGAC GATTGCTAA
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| Protein sequence | MKYTIVSSNK LQQGFTLIEL VIVIIILGIL SVIAAPKFLS LSSEAQTSSL EGVAGSIASM
NQIVHSKTQI DGIADKQDCD GTCNNHPNWD RNVGYFYVDV SGTRLYVSSG YPMAAGTSQS
DTIVEDNFTT VMGLSDEDFV FGTGANGSFA AVPKKFADKL ADIQSEKFKC HVEYRSPVPA
YSYYVRAVTD DC
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