Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1449 |
Symbol | |
ID | 5610882 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1720444 |
End bp | 1721022 |
Gene Length | 579 bp |
Protein Length | 192 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932315 |
Product | thymidine kinase |
Protein accession | YP_001473188 |
Protein GI | 157374588 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1435] Thymidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000965494 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCGCAAC TCTATTTTTA TTACTCGGCG ATGAATGCCG GTAAATCAAC TTCTTTATTA CAGTCCTCTT ATAACTACCG CGAACGCGGA ATGAATACCT TAGTGATGAC GGCATCTATC GATGACAGAT ATGGAGTAGG TAAAGTCGCG TCAAGGATCG GTATAGAAAC CGAGGCTCAG GTGTTTGCAA GCGGCGATAA TCTGGCCAAT ATGATTGAAG CTGCACTCGA AGAGCAGCCG CTGCATTGTA TCTTGATTGA CGAGTCACAG TTCTTAAGCA AAGAACAGGT AAAACAGTTG ACTCACGTCG TCGATAACTT GGATATTCCC GTCCTGTGTT ATGGTCTTAA AACCGACTTC CAGGGTGAAC TTTTCACTGG TAGTCAATAT CTGGTCGCAT GGGCCGATAA GTTAGTCGAA CTTAAGACTA TCTGTCACTG TGGCCGAAAG GCGAACATGG TCGTGCGCCT CGATGGTGAA GGTAAGCCGA TGCAGGAAGG CGAGCAGGTA GCGATAGGTG GCAATGAGAG TTACGAGTCA GTTTGTCGTA AACACTTCAG AGAGTTCCTT TGGGATTAG
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Protein sequence | MAQLYFYYSA MNAGKSTSLL QSSYNYRERG MNTLVMTASI DDRYGVGKVA SRIGIETEAQ VFASGDNLAN MIEAALEEQP LHCILIDESQ FLSKEQVKQL THVVDNLDIP VLCYGLKTDF QGELFTGSQY LVAWADKLVE LKTICHCGRK ANMVVRLDGE GKPMQEGEQV AIGGNESYES VCRKHFREFL WD
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