| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1448 |
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| Symbol | |
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| ID | 5610946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1717995 |
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| End bp | 1720163 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932314 |
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| Product | peptidyl-dipeptidase Dcp |
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| Protein accession | YP_001473187 |
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| Protein GI | 157374587 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0339] Zn-dependent oligopeptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0138668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAAAA CACTACTGGC GGTAACGATT ACCGCAACAC TGGCATTGAG CGCCTGCTCC
GGTACTGCAA CGACTCAGCA AAAATCGACT TCAGCATCGC AAACTGAGCA CTTACAAACT
CAGAGCCTGC AAACTCAGAA CCCACTGTTT CAAGCCAGTA CACTTCAATA TCAAGCGCCA
GACTTTAGCC TGATAAAGGA TGAGCACTTT CAGCCGGCAT TAGAACAGGG AATAACAGAG
CATTACCAAC AAGTCCTTGA AATTGCCAAC AATCCGGAAC CGGCGACGTT TGCCAACACC
ATAGTTGCTT TAGAAACGAG TGGTGAGCTA TTAAATCGCA CGTCGAAAGT GTTCTATAAT
TTAGCCGGCT CGAACAGCAA CCCGACCCTC AGAGCCATTC AAGGTGAGAT GGCCCCTAAG
ATGGCGGCTC ATTCTGACAA CATTAATCTT AATACCAAAC TATTTAAACG AATTGACAAC
CTCTACTTAT CTCGCAATGA ACTAGATCTG ACACCAGAAG CGATAAGGCT GATAGAGAAA
TATCACCAAA GATTCGTGAT GGCCGGAGCC AAACTCACCG ATAGTCAGAA ACAGCAGATC
CGCGTCCTCA ATGAGGAACA ATCGACACTG ACCAATGAGT TTGCACAACG CTTGATGCGT
ATGACAAAAG AGATAGCCCT GGTTATCGAT GATAAGCAGC AGCTCGCAGG CCTGTCTGAA
AGTGCAATCA GGGCAGCCAA GGCTGACGCC GATGCAAATG GTCACAGCAA TAAGTACCAG
CTCAACATCA CCAACACCAC ACGCCAACCT GTACTGTCTC AACTCGATAA CCGAGAGCTG
CGCCAAAAGG TATGGGAGCT GTCATCGAAC CGTGGCCTCA GTGGTGAAAA TGAGACCGCC
AGTTTAGTGG CCAGATTGGC ACAGTTACGC TCGGAGCGAG CCGAGTTACT TGGCTATGAA
AGCTGGGCAG ACTATCGCTT AACGCCTCAG ATGGCTAAGA CCCCAGAAGC CGTTTATAAG
ATGTTTGGCT CTATGGTTCC AGCGGTCATC GCCAACACTC AGAAAGAAGC CGACGATATT
CAAGCCATGA TAACCAAAAC CGGTGGCGAG TTTGAACTGT CACCGTGGGA TTGGGCTTAT
TACGCCGAAC TGGTACGTAA AGAGAAATTT GATCTCGACG GTGACTCGAT AAAGCCCTAT
TTCGAATTTA ATCGCGTACT CAAAGATGGC GTATTTTTCA CCCTAGAGGA TCTCTATGGT
GTCACATTCA AGCCTCGCCC GGATCTGCCG GTTTACCATC CGGATGTAAA GGCCTACGAG
ATGTTTGATA ACGATGGCAG CAGCATGGCC ATCTTCTACG CCGATTACTT CGCACGGGAA
GGAAAACGTG GTGGTGCCTG GATGAGCTCA TTTGTCACTC AATCTGGCTT ATTGAACAGT
AAACCTGTTG TCGTCAATGT GATGAACATA AAAAAAGCCC CCGATGGAGA GCCAACATTC
GTCAGTTATG ATGAAGTCAC TACCATGTTC CATGAGATGG GACATGGCAC CCATGGTATG
TTCTCGAAAG TCACCTACCC CAGTTTATCC GGCACCGCCG TATCCCGTGA TTTTGTCGAA
TTCCCATCGA CATTCGAAGA AGATTGGGCC GCCCATCCAA AAGTGCTGGA AAACTATGCT
AAACACTATG AAACAGGTGA GTCTATCCCC GAAGATCTGC TCAATAAACT GTTAAAGTCT
CGCAGCTTCA ATCAAGGCTT CGACACATTA GAATATATGT CGGCCGCCCT GTTGGATTTA
GAGTGGCATT CACTTAAAGC GGGAGCGCCA TTGCAGGATG TCGTCAGTTT CGAAGCCGCC
GCGTTGAAAA AGCATGGTGT AGACCTGCCA GCGGTTCCAC CTCGCTATAA ATCAACTTAT
TTTGCTCACG CCTTCCCGGG CGGTTACTCA TCAAGCTATT ACGCTTACAT GTGGAGTGAG
ATCCTCGCCG CCGATGCCTT CGCTTATGTT CAAACTCAAG GCGGATTAAA TCGTGAAATA
GGCATGAAAT TCCGTAAGAC GATCAGAGAG GTCGGTAACA GTGTCGCCCC AATGGAAGCT
TACAAAGCAT TCAGGGGACA AGAGCCGACA ACCGAGGCCC TGCTTAAACG CCGCGGCCTG
GACAAGTAA
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| Protein sequence | MHKTLLAVTI TATLALSACS GTATTQQKST SASQTEHLQT QSLQTQNPLF QASTLQYQAP
DFSLIKDEHF QPALEQGITE HYQQVLEIAN NPEPATFANT IVALETSGEL LNRTSKVFYN
LAGSNSNPTL RAIQGEMAPK MAAHSDNINL NTKLFKRIDN LYLSRNELDL TPEAIRLIEK
YHQRFVMAGA KLTDSQKQQI RVLNEEQSTL TNEFAQRLMR MTKEIALVID DKQQLAGLSE
SAIRAAKADA DANGHSNKYQ LNITNTTRQP VLSQLDNREL RQKVWELSSN RGLSGENETA
SLVARLAQLR SERAELLGYE SWADYRLTPQ MAKTPEAVYK MFGSMVPAVI ANTQKEADDI
QAMITKTGGE FELSPWDWAY YAELVRKEKF DLDGDSIKPY FEFNRVLKDG VFFTLEDLYG
VTFKPRPDLP VYHPDVKAYE MFDNDGSSMA IFYADYFARE GKRGGAWMSS FVTQSGLLNS
KPVVVNVMNI KKAPDGEPTF VSYDEVTTMF HEMGHGTHGM FSKVTYPSLS GTAVSRDFVE
FPSTFEEDWA AHPKVLENYA KHYETGESIP EDLLNKLLKS RSFNQGFDTL EYMSAALLDL
EWHSLKAGAP LQDVVSFEAA ALKKHGVDLP AVPPRYKSTY FAHAFPGGYS SSYYAYMWSE
ILAADAFAYV QTQGGLNREI GMKFRKTIRE VGNSVAPMEA YKAFRGQEPT TEALLKRRGL
DK
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