| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1446 |
|---|
| Symbol | |
|---|
| ID | 5610944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1714908 |
|---|
| End bp | 1715831 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640932312 |
|---|
| Product | electron transfer flavoprotein, alpha subunit |
|---|
| Protein accession | YP_001473185 |
|---|
| Protein GI | 157374585 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2025] Electron transfer flavoprotein, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0198023 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTT TAGTAATAGC AGAACATGAT AATGCCAGTT TAAAACTGGA TACTGCCAAA
GTTGTTGCCT GTGCTCAGGC TATCGGCAGT GATGTGGATG TGTTGGTTGC CGGACACGAA
TGTGGCGCCG TTGTTGAAGC GACCACTAAA CTGTCTGGTG TTAGAAGTGT GTTGGTTGCC
GATGCGGCCG TGTACGCTAA CGCTTTTGCA GATAATACTT CTGAGCTGAT CGTAGGCATC
GCTTCAGACT ATGAACATAT TTTGGCTGCG GCTACGAGTC ACGGCAAAGA TATGCTTCCT
CGTGTTTCGG CGCTTCTAGA TGTGGCTCAA CTGTCAGAGG TCGTTGAGGT GGTTAGCCCT
GATACTTTTG TTCGTCCAAT CTATGCGGGT AGTGCAATGG CTACTGTGCA GAGTCTTGAT
GATAAGAAAG TGATGACGGT GCGCTCTAGT GCATTCGATG CTGTGGCTAA CGATGGCGCC
GCTGTGACGG TATCAATCGA AAAAGTCAGC GATTCACTGT CTCAGTTTGT ATCCCAGAGC
CTGACAGAGT CCGAACGCCC GGAACTGGGT GCTGCTTCAG TGGTGGTATC GGGTGGTCGT
GGCTTGGGTA GCAGTGATAA CTTCGCTATT TTAGAGCAGC TTGCCGATAA ACTGGGTGGC
GCTTTAGGCG CATCTCGTGC GGCCGTTGAC GCAGGATTTG TTCCCAATGA TCTTCAAGTG
GGTCAAACGG GTAAAATTGT CGCGCCGGAT CTCTACATTG CGGTGGGGAT CTCCGGTGCT
ATTCAGCATC TTGCCGGGAT GAAAGATTCA AAAGTTATCG TCGCAATCAA CAAAGATCCA
GAAGCGCCAA TTTTCCAAAT TGCCGATTAC GGCTTGGAAG CCGATCTTTT TGAAGCGGTT
CCACAACTGC TCGAGCTCGT ATAG
|
|---|
| Protein sequence | MAILVIAEHD NASLKLDTAK VVACAQAIGS DVDVLVAGHE CGAVVEATTK LSGVRSVLVA
DAAVYANAFA DNTSELIVGI ASDYEHILAA ATSHGKDMLP RVSALLDVAQ LSEVVEVVSP
DTFVRPIYAG SAMATVQSLD DKKVMTVRSS AFDAVANDGA AVTVSIEKVS DSLSQFVSQS
LTESERPELG AASVVVSGGR GLGSSDNFAI LEQLADKLGG ALGASRAAVD AGFVPNDLQV
GQTGKIVAPD LYIAVGISGA IQHLAGMKDS KVIVAINKDP EAPIFQIADY GLEADLFEAV
PQLLELV
|
|---|
| |