| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1443 |
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| Symbol | |
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| ID | 5610956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1710212 |
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| End bp | 1713286 |
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| Gene Length | 3075 bp |
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| Protein Length | 1024 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932309 |
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| Product | amidohydrolase |
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| Protein accession | YP_001473182 |
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| Protein GI | 157374582 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1228] Imidazolonepropionase and related amidohydrolases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGCA AAATAAAAAC AATAATCATA CTCGCGGCTT TAGTACTTCC CTATGTCTCC
GCAGTGGAAG CAAATGACCA ACTAACTGAT AATACTCCTA AAACAACGGC ACTCACCCAT
GCCAGACTCA TGATAGAACC CGGTAAGATA CTCGATGATG CGACACTTCT AATCGAAAAC
AATAAGATTA TCGAGATAAT TAAAAATAAT AAGGTGCCTT CACAGGCATA TGTCATCGAC
TTAAAAGGTT ATACCATCTA CCCCGGCTTT ATTGACCCCT TTACCGATTA CGGCATCGAG
TTTGAATATC CTAAAGTTGA AGCCACACCA CCCATTTATG AAATAAAGCG TATAGGCGGC
AACGCCAAAA ATGGGGCAAT TCATTCAGAA AAAGAATGGT TTAACTATGT TTACCCTAAT
AGTGAACAAG CTAACAAATG GATAAACAAT GGTTTCACAA GTGTACAAAG CAGCTATCAG
GATGGAATAT TCCGCGGTCA GGGCGTTACA TTATCTCTAG CTGATAAAAC GGCGAATGAA
ATAATATATC GCTCGAATTC GGCTCATTTC TTAGCATTCG ATAAAGGCAG CTCCCCCCAA
GACTACCCCA CATCATTAAT GGGAAGCATT GCGCTTATTA GGCAAACCTT AGCCGATGCC
ACTTGGTATA AAGAGAATAA GAGCAAATCA TTTTCTAAAA CCGGAAATAA CATTGTCGAA
TTTAATAATG CCTTAGATAA ACTTTCAAAT ATCGAAAATG AGCAGATCGT CTTCGATACC
GATAATCTAA ACGACCAACT AAGAGCCGCT CAAATTTCAA TCGATCATGA GATCAAGGCC
ACACTATTAG GAAACGGTAA AGAATATGCG CGTATTGATG AACTCAGTGC ATTTTCTTAC
GGTTTAATTT TGCCTCTGAA CTTTCCTGCA GCACCCGAGG TCGGTGACGA TGATGCAGAA
AGGGAGGTTT CACTGGCAAA GATGAGACAT TGGGATCGCG CTCCGGCTAA TCCGATGACG
GTTGAGCGCG CCAAGGTGCC CTTCGCTTTA ACTCAACATG GTATTAAAAG CGATGCTTTC
TGGCCGAGGC TTAAACAGGC TATTGAGTAT GGCCTTAGTG AAGATACAGC ATTAGCCGCA
TTAACGACCG AAGCAGCAGA GGTAGCCGGC ATCGCAGACT TCAGCGGCCG ATTAAAACCC
GGCTATATGG CCGATCTGGT CGTCTCCAAG GGCAACCTAT TTAAAGATGG CTCCATACAC
AGCGTATGGC TGCAAGGTGA TGAGCTGCAA CTCATTGACC GAAACGATCG ACTATTAGAT
TTAACCTACC AGCTCCAAAT TGGCGATCTA ACCCTGGACC TCACGTTGGA TAATAGCAAA
GCCAACAGTG ATAAAATTAC CGGCACGCTT TCCAGCGGCG AACAGGAGAT AACGCTATCA
AATGTCTCCT ATCACGATAA AAGGCTGAAC TTTACGGCCG AAATGAGCGA CGCCGGATTC
GAAGGGGTCA ACCGGTTTAC GCTATGGTTC GATAGTCAGG GACTGCGTGG ACGTATGCTG
GATAAGCACA ACACCCTGAC ACCGATAGCT GGAATACTCA CAGAAAAATT GATCGCTGCG
CCACTTGCAG AGGATAAACC TGAGAGTTCC CTCATCTCCA GGCTCACTAA ACCTAATGTC
GCCTATGGTA TTGAGGGCTC AGTTGGATCA GAGAAACTGC ATATCAGCAA TGCCACCATC
TGGACCTCCG ATGAACAGGG GATACTGGAA AATACCGATC TGCTCATCTC CCGGGGTAAA
ATTGAACGCC TGGGTAAAAA CCTGTCCACC CCATCCGGTT ACCGGCTTAT CGATGCAAGC
GGTAAGCATC TGACGGCAGG TATTATCGAT GAACACTCAC ATATCGCTAT CAATGGTGGC
ACCAACGAAG GCTCAGACGC TATTACCTCT GAGGTTCGCA TAGGGGATAT CCTTAACCCC
GATGATATCG CCATCTACCG TGCATTGGCC GGGGGGGTGA CCACGGCGCA ACTATTACAT
GGCAGTGCCA ACCCTATCGG TGGACAGGCA CAGGTGATTC AGATGCGATG GGGAGAGAGT
GCAGCGAACC TCAAATACAC TCAGGCGCCG GCCAGTATCA AGTTCGCCTT AGGTGAAAAC
GTTAAACAGA GTAACTGGGG CGACAAGTTT ACCCGCCGCT TCCCCCAGAG CCGTATGGGG
GTCAAGTCTC TCTTCAGTGA GGCATTTAAT GAGGCCCGCG CCTATCAACA GGAGCTTAAA
GCCTATAAAT ACCTCAGAAG TAGTGAAAAA CGTCGTCACA TTGCACCTAA GCCTAACTAT
CGATTAGCGG CAATAGCAGA AGTACTCGAT CTGCAAAGAG ATGTTCACAT TCACTCCTAT
GTGCAATCGG AGATCTTAAT GTTTCTGCGC TTAGCCGAAG CGTACGACTT TAAAGTCAAA
ACCTTCACCC ATATTCTCGA GGGGTATAAG GTTGCAAAGG AGTTGGCCGA CCACGGCGCA
TCTGCGTCGA CCTTCTCCGA CTGGTGGGCC TATAAATTTG AGGTCTATGA TGCGATCCCT
CAAAACACCT GCCTGATGCA GAACAAAGGC GTACTCACCA GCATTAATTC AGATGACTAT
GAAATGCAGC GACGCTTAAA TCAAGAGGCG GCCAAATCTA TGATGTATTG TCATATGTCC
GCCGAAGATG CATGGAAGAT GATTACGATT AATCCTGCGA TACAACTAGG AGTAGACACC
GATTTAGGTT CGATCACCAA GGGCAAGCAG GCCGATATTG TACTGTGGGA TCACAACCCC
CTATCGGTTT ACGCTAAGGT CGAGTCGACT TGGATCCAGG GTAAGCCTTA CTTCGACCGT
AAACAGGATA AGCTGGCGCA GCAGTCCATT GCAGCAGAAC GAGCCGAGCT CATTCAAAAG
ATATTATCCA GTGAAGAGAG CGAAAGTACA CTGCCGCCCG GAGAGGTCAT CGAAGATAAG
AGCGAACCCG AATGGCATTG TGATACTCAG TTCGATGTTT GGAAACAATC CAGCCAAGGA
AGGAGCTCGC TATGA
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| Protein sequence | MNRKIKTIII LAALVLPYVS AVEANDQLTD NTPKTTALTH ARLMIEPGKI LDDATLLIEN
NKIIEIIKNN KVPSQAYVID LKGYTIYPGF IDPFTDYGIE FEYPKVEATP PIYEIKRIGG
NAKNGAIHSE KEWFNYVYPN SEQANKWINN GFTSVQSSYQ DGIFRGQGVT LSLADKTANE
IIYRSNSAHF LAFDKGSSPQ DYPTSLMGSI ALIRQTLADA TWYKENKSKS FSKTGNNIVE
FNNALDKLSN IENEQIVFDT DNLNDQLRAA QISIDHEIKA TLLGNGKEYA RIDELSAFSY
GLILPLNFPA APEVGDDDAE REVSLAKMRH WDRAPANPMT VERAKVPFAL TQHGIKSDAF
WPRLKQAIEY GLSEDTALAA LTTEAAEVAG IADFSGRLKP GYMADLVVSK GNLFKDGSIH
SVWLQGDELQ LIDRNDRLLD LTYQLQIGDL TLDLTLDNSK ANSDKITGTL SSGEQEITLS
NVSYHDKRLN FTAEMSDAGF EGVNRFTLWF DSQGLRGRML DKHNTLTPIA GILTEKLIAA
PLAEDKPESS LISRLTKPNV AYGIEGSVGS EKLHISNATI WTSDEQGILE NTDLLISRGK
IERLGKNLST PSGYRLIDAS GKHLTAGIID EHSHIAINGG TNEGSDAITS EVRIGDILNP
DDIAIYRALA GGVTTAQLLH GSANPIGGQA QVIQMRWGES AANLKYTQAP ASIKFALGEN
VKQSNWGDKF TRRFPQSRMG VKSLFSEAFN EARAYQQELK AYKYLRSSEK RRHIAPKPNY
RLAAIAEVLD LQRDVHIHSY VQSEILMFLR LAEAYDFKVK TFTHILEGYK VAKELADHGA
SASTFSDWWA YKFEVYDAIP QNTCLMQNKG VLTSINSDDY EMQRRLNQEA AKSMMYCHMS
AEDAWKMITI NPAIQLGVDT DLGSITKGKQ ADIVLWDHNP LSVYAKVEST WIQGKPYFDR
KQDKLAQQSI AAERAELIQK ILSSEESEST LPPGEVIEDK SEPEWHCDTQ FDVWKQSSQG
RSSL
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