Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1442 |
Symbol | |
ID | 5610955 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1708896 |
End bp | 1710215 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640932308 |
Product | hypothetical protein |
Protein accession | YP_001473181 |
Protein GI | 157374581 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1228] Imidazolonepropionase and related amidohydrolases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAAACG GACACATTAA AATAGGCTCA AGCTTATCCG GGGTCTTAAA AAATAGCTTA GCCCTCCCCT TCGTCATGCT GAGCACATTC ATCATGCCCG TTCAGGCCCA TGATATTTTA CCTGCGCCGG TTCAGACATC CGCCATCCTC TTTAAACATG CCACGATTCA CACGGCCGTC GATGGGGTAA AGGCCGATAG TGACCTGTTA ATAGAAGATG GCAATATAAT GGCCATCGGC AAGGAGCTCG TCGCTCCCGA GGCGACAGTT TATGATGCCA GCGGGAAACA TATCTACCCG GGACTCATCG CGCTGGATAC CAGTTTAGGC TTAGTCGAAG TTGAGATGAT GCGTCCGAGT AATGACAGCC ATGAGGTCGG TGAAATTAAT CCGCAACTGG AGGCATTGAC CGCCTTTAAC CCGGATTCGG AGATCATCCC GACCGTCAGA GTCAATGGCA TCAGTCATGC TCAGATTGTC CCCCGGGGGG AAAGCTTAGC TGGTCAATCG GCTCTGGTAT CGCTGGATAG TTGGACCGTC GAAGAGGCGA TTGTGCCGAC ACAGACAGCC TTTCACCTCT ATTGGCCCAG ACTCAAACCT CTACCCAGTG ATACGAAAAA AAGAGAGGAA CAAAGAAAAG ATTACCAAGA TCGGGTATCT CAGATATCGG ACGCATTCAC CGACGGTTAT CGCTACTATC TGGCCCATAA AGCCGAGACT AAGAGTAAGC TCGATATGCG CTGGCAATCA ATGCTGCCGC TCTATCGGGG AGAGGCTCAG CTGTTTGTGC ACGCCAACAC GCAAAAACAG ATAGAGGAAG CCGCCGCTCT GGCAAAACGC TATCAATTTA AGTTAATTAT CGTTGGCGGA TATGACGCCT GGCGACTCGC GGAACTTTTA AACGAGATAG AGGCAAAAGT GATCTATACT CGAACTCTAA GCTTGCCGAT GCGTAAAGAT GAGCCCATAG AGATGAGCTT TAAAATCCCC GCCCTGCTCA AACAGGCGCA GGTCCCATTT GCATTGGGTT TCTCATCTGA CTGGAACAGC CGAAATTTAC CCTTGGCAGC AGGACAAACG GTCGCGTACG GGCTGAGCAG GGAAGACGCC CTTAAAAGTA TCACACTCGA TGCGGCTAAG ATATTAGGTG TAGAGGATAT GGGCGCTATC GCCGTCGGGT ATAGAGCCAA TCTGGTTATC TCAGGTGGCG ACATTCTCGA CCCTATGGTG ACTAAGATCG AAAAGGTCTA TATCGATGGC AGGGACGTCG ATCTAAATAA TCGGCAACAA CAGCTTTATC AAAAGTACCT AAAGCGATAG
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Protein sequence | MINGHIKIGS SLSGVLKNSL ALPFVMLSTF IMPVQAHDIL PAPVQTSAIL FKHATIHTAV DGVKADSDLL IEDGNIMAIG KELVAPEATV YDASGKHIYP GLIALDTSLG LVEVEMMRPS NDSHEVGEIN PQLEALTAFN PDSEIIPTVR VNGISHAQIV PRGESLAGQS ALVSLDSWTV EEAIVPTQTA FHLYWPRLKP LPSDTKKREE QRKDYQDRVS QISDAFTDGY RYYLAHKAET KSKLDMRWQS MLPLYRGEAQ LFVHANTQKQ IEEAAALAKR YQFKLIIVGG YDAWRLAELL NEIEAKVIYT RTLSLPMRKD EPIEMSFKIP ALLKQAQVPF ALGFSSDWNS RNLPLAAGQT VAYGLSREDA LKSITLDAAK ILGVEDMGAI AVGYRANLVI SGGDILDPMV TKIEKVYIDG RDVDLNNRQQ QLYQKYLKR
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