| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1440 |
|---|
| Symbol | |
|---|
| ID | 5609650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1707604 |
|---|
| End bp | 1708329 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640932306 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473179 |
|---|
| Protein GI | 157374579 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1720] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00104] probable methyltransferase, YaeB/AF_0241 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTTA ACTGTCAAAT TGAGGCGGTG GCCTTCTGCC GCACTCCCTA TAAGCAAAAA
TTCGGCATTC CGAGACAGCC CGGGCTCGTG CCTTCGGCCC GGGGCTTCGT CGAGCTGCAA
GCCCCCTATA ATCATATCGA TGCCGTAAGG GGATTAGAGC AGTACTCTCA CCTCTGGTTA
CTCTTCTCTT TTCATGAAAA TCTGTCTCAG GGCTGGAAGA CCACCGTCAG ACCGCCTCGC
CTCGGAGGCA ATGAAAAACT GGGGGTCTTT GCTACCCGCT CGACCTTCAG ACCCAATGGT
ATTGGTCAGT CGGTGGTTAA GCTGCATAAG ATCCATCAAA AGAAGGGCAG CGTTATCTTA
GAGATCTCAG GTATGGATCT ACTCGATGGC ACACCGATTA TCGATATTAA ACCCTATATC
CCCTTCTCTG ACTCTCAGCC CGATGCGTTG GGCGGCATCG CACACGAAGC GCCACATTTG
ATTGATGTAT CGTTTACCCA AGAAGCCAAA GCGCAGCTGC TGGGTTACAG CAAGTTGGAG
CAGTATCCAC GCCTCGAGGA GCTTATCATT GGGGTGTTGG CACAAGATCC CCGCCCGGCT
TATAAGAAGT CAAAAGCCGA TCCTAAGCTT TATCAGGTCG CCCTGTTTGA TCTCGATATT
CTCTGGCATG TCATCGATGA ACGCATTCTG GTACATGAGA TTAAATCCGG TGTGTCGGTT
AATTAA
|
|---|
| Protein sequence | MTFNCQIEAV AFCRTPYKQK FGIPRQPGLV PSARGFVELQ APYNHIDAVR GLEQYSHLWL
LFSFHENLSQ GWKTTVRPPR LGGNEKLGVF ATRSTFRPNG IGQSVVKLHK IHQKKGSVIL
EISGMDLLDG TPIIDIKPYI PFSDSQPDAL GGIAHEAPHL IDVSFTQEAK AQLLGYSKLE
QYPRLEELII GVLAQDPRPA YKKSKADPKL YQVALFDLDI LWHVIDERIL VHEIKSGVSV
N
|
|---|
| |