| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1438 |
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| Symbol | |
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| ID | 5609648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1705153 |
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| End bp | 1706625 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932304 |
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| Product | RNA-directed DNA polymerase |
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| Protein accession | YP_001473177 |
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| Protein GI | 157374577 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3344] Retron-type reverse transcriptase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGACTT CAATCGAAGT TAGTGCACCT CCTGACAGCG CTCAATGGCA ATCCATTAAC
TGGAAAGCGG TTAAGCAACA CGTATTAAAG CTTCAAATGC GCATTGCAAA AGCAACCCGA
GAAGGTAAAC ACGGCAAGGC GAAAGCATTG CAGTGGATAT TAACTCACTC TAAATCAGCT
AAATTGCTTG CTGTTAAAAG AGTTTCTCAA AACAAAGGCA GCAAAACACC TGGAATCGAC
GGGATCATTT GGAACAGTGA TGCTCGTTGT ATAGGTGCGG TCAATCAACT GAGTAGAAAG
GGCTATCATG CCAAACCGCT CAGGCGTATC TACATCCCCA AGAAAAACGG CAAACTCAGA
CCTTTAGGCA TTCCCTGCAT GATAGATAGA GCGCAGCAAG CGCTTCATCT TCTCGCCTTG
GAGCCTATTT CGGAAACGGT GGCCGACCTC AATAGCTATG GCTTTCGACC TAACCGAAGC
GCAGCAGATG CAATTGCACA GTGCTTCAAA TGTTTATGCA TGAAGTGCTC TAGCCAATGG
GTTCTTGAGG GTGACATCAA AGCTTGTTTC GATAAGATAG GTCATCAATG GCTCATCGAC
AACATTCAAT TAGATAAGCG AATGCTGAAA CAATGGCTTG GATGTGGTTA TGTTGATAAA
GGATTGTTCT ACAAAACAGC AGAAGGAACA CCGCAAGGTG GGATAATCTC CCCAACGCTG
ATGTTGCTGA CGCTGGCTGG GTTAGAGCAG TTGGTTAAGT CTATTGCTTG TAAAACAGGG
AATAGAGTCA ACTTTATCGG ATATGCAGAC GATTTTGTTA TCACAGGTTC TTCGAAGGAA
GTGCTCGTTA ATGAAATCAA GCCGCAGCTA ATTGGTTTTC TACAGGAAAG AGGCTTAACA
CTCTCTGATG AGAAAACGCA CATAACTCAT ATCGATGATG GTTTTGACTT TCTGGGATTC
AATCTTAGAA AGTACAAAGG CAAACTGCTC ATTAAACCGA GCAAGAACAA CGTTCTATCA
TTTTTGAGTA ATCTACGTGA ATTCATCAGA AAACATCCAA CAATCCCCGT TAACGATTTA
ATCAAAATAT TGAATCCGAA ACTGAGAGGA TGGGCGAACT ATTATCGCCA CAGTGTTGCT
AAGCAAGTTT TCGGTTATGT AGGCCATCAA CTTTTCTGGT TGTTATGGCG TTGGGCAGTT
AGGCGTCATC CAACTAAAAG TAAAGACTGG GTGAGGCGTA AATATTATTT GGACGGTAAG
GGACAATGGC AATTTCATGG TTGGCATAAA ATAGCGAACA TGGATTGTCG ATTTAACCTT
GTCCAAATAG CTCAAACGCT CATAAAAAGA CATGTAAAAA TCAGAAGCGC AGCCATACCT
TACGACCCAG AATACGAAGC TTACTTAAGT AAGCGGAAAT GGGCTAAGCA AGGCAGAAAC
TCTTGGTTCG AACCTGTTTT AGCTGCGATG TAG
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| Protein sequence | MMTSIEVSAP PDSAQWQSIN WKAVKQHVLK LQMRIAKATR EGKHGKAKAL QWILTHSKSA
KLLAVKRVSQ NKGSKTPGID GIIWNSDARC IGAVNQLSRK GYHAKPLRRI YIPKKNGKLR
PLGIPCMIDR AQQALHLLAL EPISETVADL NSYGFRPNRS AADAIAQCFK CLCMKCSSQW
VLEGDIKACF DKIGHQWLID NIQLDKRMLK QWLGCGYVDK GLFYKTAEGT PQGGIISPTL
MLLTLAGLEQ LVKSIACKTG NRVNFIGYAD DFVITGSSKE VLVNEIKPQL IGFLQERGLT
LSDEKTHITH IDDGFDFLGF NLRKYKGKLL IKPSKNNVLS FLSNLREFIR KHPTIPVNDL
IKILNPKLRG WANYYRHSVA KQVFGYVGHQ LFWLLWRWAV RRHPTKSKDW VRRKYYLDGK
GQWQFHGWHK IANMDCRFNL VQIAQTLIKR HVKIRSAAIP YDPEYEAYLS KRKWAKQGRN
SWFEPVLAAM
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