| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1435 |
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| Symbol | |
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| ID | 5609845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1699902 |
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| End bp | 1701089 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932301 |
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| Product | outer membrane protein assembly complex subunit YfgL |
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| Protein accession | YP_001473174 |
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| Protein GI | 157374574 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1520] FOG: WD40-like repeat |
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| TIGRFAM ID | [TIGR03300] outer membrane assembly lipoprotein YfgL |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00436536 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCTT GGTGCAAAAC ATTGCTCGCA TGTGGATTGA GCTTGGGGCT GTTATCGGCC
TGTTCGTCCA GTGATGTAGA AGAAGAGCCG ATTAGTCCTT TGCCTGAGAT TGAGGCAAGT
GTCTTTCCTG AGGTGAGTTG GAGTGCCTCT GTAGGTAATG GTGTGGGGGA TTATTACTCG
CGTCTTCGAC CTGCCGTGCG TTACGACAAG TTATATGTCG CCGATAGATA TGGTGAAGTC
ACCGCATTCG ATGAGAAAAC CGGTGAAAAA GTTTGGAGCC AGGATTTCAG TTCAGTATTT
AAGGACAACA TTCTTGCTAA GAACAAGGGG GCTAAATTAG CCTCCGGCGT TACGGCAGCC
CGTAATAAGG TGTTTATCGG TGGAGAGAGT GGCATATTAG GTGCGCTCGA TGCTGAAACG
GGTGAGACTC TCTGGTCAGT TATCGCAGGT GGTGAGCTAT TGTCGGCGCC ATCCGTCGGT
GAAGACCTTG TGGTCGTCAA CACCAGCTCG GGAACACTCG AAGCCTTTAA TGTCGATGAT
GGTGAGAAAC AGTGGGCTTA CGAGTCTAAG CTACCGAATT TAACCTTGCG CGGTACCGGT
TCAGCGAGTT ATGAGTCTGG CGGTTTCTTT GTTGGCACGG CAGACGGCAA GATCGCGGTT
GTCATCAAAA ACAATGGTCA GGCGGCTTGG GAACAAGCGA TATATACGCC TAAGGGGGGT
AATGAGTTTA CCCGTATGGC CGATATCGAT ATGAAGCCAT TGATCATAGG TGAAAACCTC
TATGCCGTTA GTTTCAACGG TAACTTGGTC TCTATGGAAG TGAGAACCGG ACGCGTTGTA
TGGACTCGTA AATACTCGAG CTTCCATGAA CTTGCAGACT CTGGCGTGAG CTTATTCCTC
GTCGATGACC ATAGCCGTAT ATACTCAGTC GATAGACGTA GTGGTTTAGA AAGCTGGAGC
AATACCGAGT TAACTAACCG CAACTTAACA TCGGCTGCGG TATTTAAAGA TTATATTGTT
GTCGGAGACT TCGAAGGTTA CCTACACTTT ATCAATAAGA GTACCGGCGC CTTGGTGGGT
CGCATTCAGA TCGATGGTTC AGGTTTATTT AGCCAGCCAC TGGTCGAAGG TGATAACATC
TATGTTCAGA CTCGAGATGG TAAAGTTGCC AGAATAACGC TTCCGTAA
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| Protein sequence | MKSWCKTLLA CGLSLGLLSA CSSSDVEEEP ISPLPEIEAS VFPEVSWSAS VGNGVGDYYS
RLRPAVRYDK LYVADRYGEV TAFDEKTGEK VWSQDFSSVF KDNILAKNKG AKLASGVTAA
RNKVFIGGES GILGALDAET GETLWSVIAG GELLSAPSVG EDLVVVNTSS GTLEAFNVDD
GEKQWAYESK LPNLTLRGTG SASYESGGFF VGTADGKIAV VIKNNGQAAW EQAIYTPKGG
NEFTRMADID MKPLIIGENL YAVSFNGNLV SMEVRTGRVV WTRKYSSFHE LADSGVSLFL
VDDHSRIYSV DRRSGLESWS NTELTNRNLT SAAVFKDYIV VGDFEGYLHF INKSTGALVG
RIQIDGSGLF SQPLVEGDNI YVQTRDGKVA RITLP
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