| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1432 |
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| Symbol | ispG |
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| ID | 5611550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1696707 |
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| End bp | 1697822 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932298 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_001473171 |
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| Protein GI | 157374571 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0262907 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.325873 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTACAGCG AAAATCCAAT CAAAAGACGA GCTTCAACCC GTATCTATGT AGGCGACGTG
CCTATTGGAG ACGGTGCCCC TATTGCGGTT CAGTCGATGA CCAATACTCT CACGACAGAT
GTCGATGCAA CTGTTGCACA AATCCGAGCA TTAGAAAATG TGGGCGCGGA TATTGTTCGG
GTTTCAGTAC CGACCATGGA TGCCGCCGAA GCGTTTAAGT TGATTAAGCA GCAGTCGAAC
ATCCCTTTGA TTGCAGACAT TCACTTCGAT TACCGCATCG CGCTTAAAGT TGCTGAATAT
GGCGTTGACT GCCTGCGTAT CAACCCCGGT AATATTGGTA ATGAAGAGCG GATCAGAAGC
GTCGTCGAAT GTGCCCGTGA TAAAAATATT CCCATTCGGA TCGGTATCAA TGGCGGTTCA
TTAGAAAAAG ATCTGATGGA TAAGTACAAA GAACCCACTC CCGAAGCCCT GCTCGAGTCG
GCCATGCGTC ATGTCGACAT TCTGGATAGG TTGAACTTCG ATCAGTTTAA GGTCAGTGTG
AAGGCATCGG ACGTGTTCCT CGCGGTTGAA GCATATCGCC TGCTTGCTAA ACAGATTGTA
CAGCCTCTGC ATCTTGGGAT CACCGAGGCG GGTGGCGCTC GCTCCGGCTC AGTTAAGTCA
GCCGTGGGTC TGGGGATGCT ATTAGCCGAA GGTATCGGCG ATACCCTGCG TGTCTCTCTG
GCGGCCGATC CAGTTGAAGA GATCAAGGTT GGCTTCGATA TATTGAAATC ACTGAGAATT
CGTTCTCGCG GCATCAATTT TATCGCCTGT CCATCGTGTT CTCGCCAAGA ATTTGATGTG
ATTAGTACGG TCAATGAGCT CGAACGCCGT TTAGAAGATA TCGTGACACC AATGGATGTT
TCTATTATCG GTTGCGTCGT GAACGGTCCC GGTGAGGCAT TAGTCTCTGA TATCGGACTT
ACCGGTGGCG CTCGTAAGAG TGGCTATTTT GATGACGGCG TCAGACAGAA AGAGCGTTTC
GATAATGATA ATATTGTCGA CTCTCTTGAG GCTAAGATCA GAGCCAAGGC ATCAATAATC
AATGGGCGTA TTCCTGCTCA AGATATAAAT AAGTAA
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| Protein sequence | MYSENPIKRR ASTRIYVGDV PIGDGAPIAV QSMTNTLTTD VDATVAQIRA LENVGADIVR
VSVPTMDAAE AFKLIKQQSN IPLIADIHFD YRIALKVAEY GVDCLRINPG NIGNEERIRS
VVECARDKNI PIRIGINGGS LEKDLMDKYK EPTPEALLES AMRHVDILDR LNFDQFKVSV
KASDVFLAVE AYRLLAKQIV QPLHLGITEA GGARSGSVKS AVGLGMLLAE GIGDTLRVSL
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV ISTVNELERR LEDIVTPMDV
SIIGCVVNGP GEALVSDIGL TGGARKSGYF DDGVRQKERF DNDNIVDSLE AKIRAKASII
NGRIPAQDIN K
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