| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1430 |
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| Symbol | |
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| ID | 5611548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1694883 |
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| End bp | 1695671 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932296 |
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| Product | type IV pilus biogenesis/stability protein PilW |
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| Protein accession | YP_001473169 |
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| Protein GI | 157374569 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.14258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.202712 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGCAAG GATTAACCCA AATTACAGCC CTTACCCTGA TAGTCATGGG CTTGTTGAGT
GGATGTGTAT CAGAGCGTAC CTATAGCGGC ACAGATGTCC CCGTGGCCGA GAAGGAGTTT
GATGGCGAGT CTGCTGCAAG ACAGAGGGCG CAACTTGGAT TAACCTATTT GCAAAAAGGC
AACAGTCAGC AGGCTAAATA CAACTTAGAT AAGGCGGTCG AGTACGCACC TGACCTTGAG
GCTGTGCATG TCTCGATGGC CTATTACTAT CAGACTGTTG GCGAACTTGA AAATGCTGAG
GCATCCTATC GCAAGGCGAT AAGAACCAGT GATGCTTCAG GCGATGCTAT GAATAACTTT
GGCGTTTTCT TGTGTCAGCA AGAGAAATAT AAGCAGTCAG AGGAGATGTT CCTTAAAGCT
GTGAGAATGC CTAAATATAC TCGTTCAGCC TCGAGTTATG AGAACTTAGG CATCTGCAGC
CGTAAAGCGG GTCAGTTAGA TAAAGCGAAG AGATACTTTG CCACGGCCTT GAAGTACGAT
CCGCGTAGGC AGGTGACTTT AATTGAATTA ACAGAGATTG ACGTTGAAAC TGGCGATTAT
CTCAATGCAA GGGCTCAATT AGTACGTTAT CATCGAGTTG TTGCTGAGTC CGCGGAGAGT
TTGACGTTGG GAATAAAAAT TGAGCAAGGC TTAAATGATC TAGATGCAGC CAGAAAATTT
GGCATTTTGC TTCTGGCAAA GTTTCCGGCA TCCATAGAGG CTAAGCTGTA TCGAGCAAGT
ATGCACTGA
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| Protein sequence | MKQGLTQITA LTLIVMGLLS GCVSERTYSG TDVPVAEKEF DGESAARQRA QLGLTYLQKG
NSQQAKYNLD KAVEYAPDLE AVHVSMAYYY QTVGELENAE ASYRKAIRTS DASGDAMNNF
GVFLCQQEKY KQSEEMFLKA VRMPKYTRSA SSYENLGICS RKAGQLDKAK RYFATALKYD
PRRQVTLIEL TEIDVETGDY LNARAQLVRY HRVVAESAES LTLGIKIEQG LNDLDAARKF
GILLLAKFPA SIEAKLYRAS MH
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