Gene Ssed_1429 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1429 
Symbol 
ID5610291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1693728 
End bp1694849 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content45% 
IMG OID640932295 
Productribosomal RNA large subunit methyltransferase N 
Protein accessionYP_001473168 
Protein GI157374568 
COG category[R] General function prediction only 
COG ID[COG0820] Predicted Fe-S-cluster redox enzyme 
TIGRFAM ID[TIGR00048] radical SAM enzyme, Cfr family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0876618 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAA AGAAGATCAA TTTATTGGAT CTTGACCGTA AAGGGTTAAG AGCATTATTC 
ACAGAAATGG GTGAAAAGCC TTTCCGTGCC GATCAATTGA TGAAGTGGAT TTATCATTTT
GGCGAGACTG ATTTTGATGC GATGAACAAT ATCAATAAGG TGTTGCGAGC TAAGTTAAGT
GCGCGATGTG AAGTGGTAGC GCCTGAAATT TCCAGTTACC AAAAGTCGGC TGATGGTACG
ATTAAGTTCG CAATCAACGT CGGTCAGGGC CAGGAAGTCG AAACTGTCTA TATTCCAGAA
GAAGATAGAG CAACTTTGTG TGTCTCTTCT CAGGTGGGTT GTGCACTGGA GTGTACTTTC
TGTTCTACGG CGCAGCAGGG TTTTAACCGT AACTTAACCG TTTCCGAAAT CATCGGTCAG
GTTTGGCGAG TTGCCAATTT TATCGGTTTC CAAAAAGAGA CAGGCGAAAG ACCTATCACT
AACGTAGTGA TGATGGGCAT GGGTGAGCCG TTGTTAAACT TAGCTAATGT TATACCTGCA
ATGGATATTA TGCTCGACGA TTTCGGCTTT AGCCTGTCTA AACGCCGTGT CACGGTATCG
ACATCGGGTG TCGTTCCTGC CCTCGACAAA CTCGGTGATG CGCTCGATGT CGCTTTAGCC
GTAAGTATTC ACGCACCTAA CGATGAACTG CGTGACGTCC TGGTCCCCGT CAATAAGAAA
TACCCGTTGG AAGAGTTTTT GGCCGGGATC CGTCGCTATA TTGCCAAGTC CAATGCTAAC
CGTGGCCGCG TTACGGTAGA GTATGTGATG TTAGACCATA TCAATGACAG TACCGATCAG
GCCCATGAAC TGGCTAAATT GATGAAAGAT ACCCCATGTA AGATTAATCT GATCCCATTT
AATCCTTATC CGGGCTCTCC ATACGGTCGC TCTTCTAATT CACGCATCGA TCGTTTCTCT
AAAGTTCTGA TGGAATATGG GCTTACCGTT ATCGTAAGAA AAACCCGTGG AGACGATATT
GATGCGGCTT GTGGACAGCT GGCAGGGGAT ATTCGCGATA GAACCAAGCG TTTAGCGAAA
AAACGCATGC AAGATAGTCA GATTTCGGTC ACAATAAACT AA
 
Protein sequence
MSEKKINLLD LDRKGLRALF TEMGEKPFRA DQLMKWIYHF GETDFDAMNN INKVLRAKLS 
ARCEVVAPEI SSYQKSADGT IKFAINVGQG QEVETVYIPE EDRATLCVSS QVGCALECTF
CSTAQQGFNR NLTVSEIIGQ VWRVANFIGF QKETGERPIT NVVMMGMGEP LLNLANVIPA
MDIMLDDFGF SLSKRRVTVS TSGVVPALDK LGDALDVALA VSIHAPNDEL RDVLVPVNKK
YPLEEFLAGI RRYIAKSNAN RGRVTVEYVM LDHINDSTDQ AHELAKLMKD TPCKINLIPF
NPYPGSPYGR SSNSRIDRFS KVLMEYGLTV IVRKTRGDDI DAACGQLAGD IRDRTKRLAK
KRMQDSQISV TIN