| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1419 |
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| Symbol | |
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| ID | 5609655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1682958 |
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| End bp | 1684703 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932285 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001473158 |
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| Protein GI | 157374558 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.337287 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.697858 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAA TCAAACCATT AAGAAGTCTG AAGAAAAAAA TAAGACTGCT TTTTTATATC
GTCGTATTTC TTACATTGGC GATAGGCTTA GTCTCAATTT GCCTCTCTAT CGATCTGCAA
AAAAGAGTCG ATATGATGAT AAACCATCAT ATTAATGAAA TTGTTTACGC TCTCGAACTG
TCCAAAGATA GTCAAAAGCT ACAGGTCATC AGTGTCAAAT TGTCGAAAAT TGACTCCGAG
GAGCAACGAA TTCAGCTCCT GTCAGACTTG CAGCAACAGT GGCAGACATT GGAAAGCGGA
CTCGAAAATT TAACCAGTAT GGCAAGCAGC AATGAGAGGA TCAAAAAACT AAACCAGCTC
TCATCCGATA TTAAGAAGGC CGCAGAGCAA CAACCCTTAC TGGAGCAACT CACCGAGACA
GCCATTGCCG CGCAGATCCA GGCCAGTCAC CTTCACCTGA ATATGGAGCT GATCCAAAAA
GGGTTCGCCC GCAGCGTTCA GAAACAGCTA GGTATTCTGG ACCAATACGC CAACACCTTA
CTCGCCACAC AAGCGTTTAA TGAATTAAAG CGTGTACTGG ATGAACACAG ACAACTCGCG
CAGTTTTTGC ATCAAGGAGA GGAACTTTTC AGGTTAGTCG CAGCCGTGAA CAAGAGTTCG
GATAACGCAG AGCTAAACCT GTTACAAAGA GAATCTATGC GTCACTTCCT TGCCTTAAAA
AAACAATCTA TGGACTCTAT CGTGGCTAAG GAGATACAGA GTGACTGGCT CTCACAGATG
GAGCCTAACT TGGTAGGTGA CGCCAATATC TTCGCATTTA GTCGTGAAGC TCTCAATAGC
AAACGTATAG CGGGTACTTA CCTCGAAATT CAAGCAAGTT CAGCACAAGA TATAGCTCGA
TTTTCCAGTG AGCTGGTTGA AGAGGCAAAC AAGCAAGTTC ATTCGGCGGG GGCGGAATTA
AAGAGCGACA GTAATTCGTT CGTCATCTTA ATTTTTATCG CAGGCGTGCT CTACACCTTT
TTTATCTGGC TAACCAATTG GCACTTCATC TCAAAAGGGA TTATTCAACC TGTCATCGCC
ACCAGCAACG CGATGCAAGC CATCGCCAGT GAGAAAACCG ATACACCACT TCCAAAGACC
AATAATCTTG AATTGCAACA GATGGTCAGC TCCTTAGAAA CCCTGAAAAG CTATGCCGCT
CAGGTAAAAG CCATTTCTGA GATTGATGGG TTAACCGGTG CATTTAACCG TCGTTACTTC
GATCTACGGC TCGATCAAGC GTTACAGTCA GCACACAATA CGCCGCACCC TCTATCTATT
ATTCTTTTCG ATGTCGATAA CTTCAAGCAA TTCAACGACC GATATGGACA CGTTAGCGGA
GACCAATGTC TAAAACAGAT ATCGGCCTCA ATGAAGGCGA TGCCTGAATT GCAGAACAAG
ATATTTGCAC GATACGGAGG CGAAGAGTTT ATCGTATTCC TGCCATACAC AGATGCTACC
TTGGCAAAAG AGATCGCCGA ACTGATGAGA AAAAAAATAT TTCATCTGCA GATCCCCCAT
GAAGATTCAG TTCATCGACA ACATATCACT GTTAGCATTG GAGTCTGTAC TACAGTCCCA
AATAACGACA CGACAACCGA GTCAATCATT ATTCAGGCAG ATCAAGCCCT GTATGAAGCC
AAGCAGGCTG GTAAAAATTG TGTAAGAGAG ACCGGCACCG GGTTAAACTT CACAGAGATG
TCATAG
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| Protein sequence | MKSIKPLRSL KKKIRLLFYI VVFLTLAIGL VSICLSIDLQ KRVDMMINHH INEIVYALEL
SKDSQKLQVI SVKLSKIDSE EQRIQLLSDL QQQWQTLESG LENLTSMASS NERIKKLNQL
SSDIKKAAEQ QPLLEQLTET AIAAQIQASH LHLNMELIQK GFARSVQKQL GILDQYANTL
LATQAFNELK RVLDEHRQLA QFLHQGEELF RLVAAVNKSS DNAELNLLQR ESMRHFLALK
KQSMDSIVAK EIQSDWLSQM EPNLVGDANI FAFSREALNS KRIAGTYLEI QASSAQDIAR
FSSELVEEAN KQVHSAGAEL KSDSNSFVIL IFIAGVLYTF FIWLTNWHFI SKGIIQPVIA
TSNAMQAIAS EKTDTPLPKT NNLELQQMVS SLETLKSYAA QVKAISEIDG LTGAFNRRYF
DLRLDQALQS AHNTPHPLSI ILFDVDNFKQ FNDRYGHVSG DQCLKQISAS MKAMPELQNK
IFARYGGEEF IVFLPYTDAT LAKEIAELMR KKIFHLQIPH EDSVHRQHIT VSIGVCTTVP
NNDTTTESII IQADQALYEA KQAGKNCVRE TGTGLNFTEM S
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