| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1416 |
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| Symbol | |
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| ID | 5609700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1679881 |
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| End bp | 1681362 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932282 |
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| Product | putative signal transduction protein |
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| Protein accession | YP_001473155 |
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| Protein GI | 157374555 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1639] Predicted signal transduction protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGCTTT CCAATAACCA ATCTAATACC AAATCGAAGG GAGTCGATTA TTGGACCAAA
CGCATCAGCG ATCAGGAGAT GCCGGCATTG TGCTCTACGG TAAAGACCTT AGAGAAGCTG
GCAAAAGATG ATGTCTCATC CCTAAGTATA TTAGGGAAGA GTGTGATGCA TGATAATGCC
TTAACCTCCC GAATTTTGCG GGTGGCGAAC AGTGCAACCT ATAGCAAAGG CGTCAGCCAT
GTGACCACTG TGAGTCGTGC ATCTGTCGTC TTAGGCTTCG ATACCATACG TAATATCTGT
ATTACAGCAA AGCTACTCAG TAGCCTGCTG GAGTCTGAAG GCTTGACTCC GGGGGTGTAT
CAGAGGCTTA TCAAGCTGAT GGCGAGAGCG TTTCAGGCTG CCATGTTAGC TAAGATGATG
CTGCGAGATC ACGACGAGGA GCTACAAGAG GAGGTCTTTA TCGCCTCGCT ACTCTACCAT
CTGGGGGAGA GTGCATTTTG GAGCACCGGT TGCGAAGAGG CGGTGGATCT CGATGCCTCT
ATGGCAGACT GTGAGGACCC TATACAGGAG AAGGCGATGA TCCGTGAGGT TTTAGGCACC
TCGTTTAATA CCCTGTCCTT AGGTATTGCA AGAAACTGGG GCTTAGGTGA TGTGTTATTA
AAGTCCCTCA GCAACCCCAA CCAGAGAACG CCAGAGATCC GCAGTATCTA TCTGGCCAAT
CAGATCAGTG AGCTCTTAGC ACAAGAGCCC CTTCCGGCAG AACTACTACA GCAGAGGCTT
AAACAGACTG CCGACATGCT GGACATTAAG GTCGATGAAC TCAAAGGACG GATGATACGG
TGCAGTAATG CGACAAAAAA GTTAGCCGAA GCCTATGGAG CTAAGGTATT AGTCGAGCAC
CTACCTAATC CTAAGCATTT AACCAAAGAT CTCAATGCTA AAGTCGATGC CCCCGTTATT
CGTATGCCTG ATATGAATGA ACAATTGAAA AAACTCAGAG AACTCACTAA TTGCGCTATG
GTGAAAGCCG ATTTTAACCA GGTGATCACG ACGACCTTAG AGGGGATTCT TACCGGGGTT
GGCGTCGATC GCTGTGGCGT CTTACTGCTT TCGCCCAACC GCAAGCGTTT GCAACCGCGT
GTCGTACTGG GAGATGGTGC GGAGCAGATG AAAAATGAGT TTATCATCAC ACTCGAACAG
CCCCAGTGTC TGTTTTGTGA CTGCATTGAG CTGAAACAGC CCATGTTTGT GGATGAGCCC
AGTTCGCCCA AGTGGCGTCT GTATATGGAT GATGATTTGA AAAATAAAAC CTCATCCACA
GGCTTTATGA TATCGCCCTT ACTGGTCGAG CAGAAGGTTA TCGGTATTAT CTATGCCGAC
AGAGACAGCA CAGACCGCAA ACTCGACCAG TCGGAATTCG ATAACTTCAC TCATTTCTCT
CAACTGGCTA ATGTCTGCTT ATCGGCAGCG ATGGGACACT AA
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| Protein sequence | MKLSNNQSNT KSKGVDYWTK RISDQEMPAL CSTVKTLEKL AKDDVSSLSI LGKSVMHDNA
LTSRILRVAN SATYSKGVSH VTTVSRASVV LGFDTIRNIC ITAKLLSSLL ESEGLTPGVY
QRLIKLMARA FQAAMLAKMM LRDHDEELQE EVFIASLLYH LGESAFWSTG CEEAVDLDAS
MADCEDPIQE KAMIREVLGT SFNTLSLGIA RNWGLGDVLL KSLSNPNQRT PEIRSIYLAN
QISELLAQEP LPAELLQQRL KQTADMLDIK VDELKGRMIR CSNATKKLAE AYGAKVLVEH
LPNPKHLTKD LNAKVDAPVI RMPDMNEQLK KLRELTNCAM VKADFNQVIT TTLEGILTGV
GVDRCGVLLL SPNRKRLQPR VVLGDGAEQM KNEFIITLEQ PQCLFCDCIE LKQPMFVDEP
SSPKWRLYMD DDLKNKTSST GFMISPLLVE QKVIGIIYAD RDSTDRKLDQ SEFDNFTHFS
QLANVCLSAA MGH
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