| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1414 |
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| Symbol | |
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| ID | 5609885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1676315 |
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| End bp | 1678033 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932280 |
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| Product | malate synthase |
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| Protein accession | YP_001473153 |
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| Protein GI | 157374553 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2225] Malate synthase |
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| TIGRFAM ID | [TIGR01344] malate synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0160844 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACACG AAGTAACCGA CAACAGACAG AATGATTCAA CGCTTGCATC ATCGGCATTT
GAACATCAGA TGTTCAAAGA GAGCACTGCC ACCCGCACCT CTGAGACAGA GATGGATATA
AGAGATAGGC TTACCATTAA AGGGGGGCAT GTCGAGGGGC AAGAGCAGGT TTTTACCGAG
GGGGCCATGA GTCTGCTCGA ATTGCTGTGT AAACAGTTTG CCTCGCAAGT GCCACAGCTT
CTTTCAAACC GAGTGAAAAA GCAGGCGTTA ATCGATGCCG GTGAATTGCC AAACTTTCTG
CCACAGACCC GCGCGATAAG AGATGGTGAT TGGCAGATCC GTGGGATCCC ACAAGATTTA
ACCGACAGGC GTGTCGAGAT CACCGGACCT GTCGAGCGCA AGATGATCAT CAATGCCTTG
AATGCCAATG TGAAGGTATT TATGGCCGAT TTTGAGGATT CATTGGCGCC GAGTTGGAAT
AAGGTGGTTG AGGGGCAGAT TAACCTGCGT GATGCGGTGC GCGGTGAAAT TGAATACACC
TCGCCAGAGA CAGGCAAGCA TTATCGACTC AATGATTCCC CTGCGGTATT GATCTGTCGC
GTTCGTGGTT TGCACTTGCT CGAAAAGCAT GTGGAGTTTG ACGCGTCGAG TATCCCTGCA
TCCCTGTTCG ATTTTGCCCT CTATTTTTAC AATAACTATC GACAACTTTT GACAAAAGGC
AGTGGCCCCT ATTTTTATCT CCCCAAATTA GAGAGTCATG AGGAAGCCCG CTGGTGGGCC
AAGGTGTTTG CCTTCGTCGA AGATCGTTTC TGCCTGCAGC CAGGCACGAT TAAGTGTACC
TGCCTGATTG AGACGCTGCC CGCAGTGTTC GAGATGGAGG AGATCCTCTA TGAGCTGAGA
TCGAACATAG TGGCGCTTAA TTGCGGCCGC TGGGACTACA TTTTCAGCTA TATCAAAACA
TTAAAGAATC ATCCGGATCG TATTCTGCCC GACAGGCAAG CCGTGACCAT GGATAAGTCA
TTTTTAAGCG CTTATTCACG GTTATTGGTT AAGACCTGCC ATAAGCGCGG CGCTTTGGCC
ATGGGGGGAA TGGCTGCATT TATTCCTGCC AAAGAGAGCG AAATGAATCG AGAGGTGCTT
GAAAAGGTAC GCAGAGATAA AGAGCTCGAG GCGAGAAATG GACACGACGG CACTTGGGTG
GCACATCCGG GCTTAGCCGA TACCGCCATG GGGATCTTCA ATGAGTATAT AGGTGAGGAT
CACGTTAACC AGTTACATAT CACTCGTGAT GTGGATGCGC CCATTCACGC CAGAGATCTG
CTGTTGCCCT GTGAGGGAGA GCGCTCCGAG GCCGGGATGC GGGTCAATAT CCGCATCGCA
TTGCAATATA TCGAGTCCTG GATAAATGGC AATGGATGTG TCCCTATCTA TGGCCTGATG
GAAGATGCGG CCACCGCCGA GATATCACGA ACTTCAATCT GGCAGTGGAT AAAACACGAG
CAGAAACTCT CTAATGGGGC TTTGGTGACT AACGTCCTGT TCAAGGAGAT GTTAGTGGAG
GAGCTGGCTA ACGTGAAGCT TGAGGTGGGT GCGGAGCGGT TCACCCATGG CAGCTTTACT
CAGGCGGCAG TCCTGCTCGA GAAGATCACC ACCTCCGATG AGCTTGTCGA TTTCCTGACT
CTACCGGGAT ATGAAATGTT AACCGGCCAA TTCGGCTAA
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| Protein sequence | MTHEVTDNRQ NDSTLASSAF EHQMFKESTA TRTSETEMDI RDRLTIKGGH VEGQEQVFTE
GAMSLLELLC KQFASQVPQL LSNRVKKQAL IDAGELPNFL PQTRAIRDGD WQIRGIPQDL
TDRRVEITGP VERKMIINAL NANVKVFMAD FEDSLAPSWN KVVEGQINLR DAVRGEIEYT
SPETGKHYRL NDSPAVLICR VRGLHLLEKH VEFDASSIPA SLFDFALYFY NNYRQLLTKG
SGPYFYLPKL ESHEEARWWA KVFAFVEDRF CLQPGTIKCT CLIETLPAVF EMEEILYELR
SNIVALNCGR WDYIFSYIKT LKNHPDRILP DRQAVTMDKS FLSAYSRLLV KTCHKRGALA
MGGMAAFIPA KESEMNREVL EKVRRDKELE ARNGHDGTWV AHPGLADTAM GIFNEYIGED
HVNQLHITRD VDAPIHARDL LLPCEGERSE AGMRVNIRIA LQYIESWING NGCVPIYGLM
EDAATAEISR TSIWQWIKHE QKLSNGALVT NVLFKEMLVE ELANVKLEVG AERFTHGSFT
QAAVLLEKIT TSDELVDFLT LPGYEMLTGQ FG
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