| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1404 |
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| Symbol | |
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| ID | 5613868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1665016 |
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| End bp | 1667388 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640932269 |
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| Product | anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein |
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| Protein accession | YP_001473143 |
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| Protein GI | 157374543 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAGAC GTGATTTTTT AAAACTCAGT GCCGCTGCAG GTGCGGTCTC CTGTGTGACT
GCCTGTGGCA GCAAAAAGAC AGAAACCGTT ATTCCAGAGG TTCCGGTAGC CGAAAAAATC
AATTGGAGTT CCTGCACCTG TAACTGTGGC CACAGTTGTC CGCTTAAGGT TGTCACTCGA
GATGGCAAAA TTGCCCGAAT CGAGTCTGAT GATCTGGGGG ATGACAGTTG GGAGAGCCAT
CAGTCCCGAG CTTGTGCCAA AGGACGCTCA ACCAAGAAAA AAGTCTACGC CGCAGATCGC
CTAAAGGTGC CGATGAAGCG TGTAGGTAAG CGCGGAGAGG GGAATTTCAG GGAGATCAGC
TGGGAAGAAG CCTTTGACAC CATTGCCGCT CAATTAAGGC GAGTTATTGA TACCTATGGT
AATGAGTCCG TTTACTGTCA ATACGCTTCC GGGCGCTTGT ACTCCTTTTT CTCCGGTGGT
CACTGGGCTT ATGGCGGACT CTGGGGAGCT AAGCTGCTGA ACATTTTGGG TGGTTACCTG
GGTCAATATA ACACCTATAG CAGCGGACAG GCATCGAACG CGGGTCAGTA CACCTTCGGT
GGTCGTCCGG CAAGTGGCTA TGCGGAGCTG AGAAACAGCG ATCTATACCT GAGTTTTGGT
CATAACCCGG CCGAGACTGA GATGAGCGGC GCCGGCGGCA GCTATGCCCT TAGCGTGGTC
GCTAAAGGCG TAGAAACTTA TGTCGTTGAC CCGCGTTACT CAGATACGGC TGTGAGCAGC
CAGTGTCATT GGCTTGCCAT ACGCCCCGGC ACCGATGGCG CACTTTGTGA AGCATTAGCG
TACGAGATAA TTACTCAAGG TGCCGCCGAT GAAGCCTTCC TGGCCAAGTA TTGTGTCGGT
TACGATCAAT CGACTCTGCC GGCCAGCGCG GCCGCAAACA GCGACTATAA GTCTCATATC
CTTGGCCAGG GGCCGGATGG GGTGGTTAAA ACCCCTGAGT ACGCTGCAGC CATTACCGGT
ATCTGTGCCG AAGAGATCCG TCTGCTGGCC ACTAAGCTGA TTGCTGCCAA GGCGCCGTTT
ATCTCTCAAG GGCTCGGTGT ACAGCGCCAT GCGTGTGGAG AGCAGGCGGT TCGCTCCATT
CTGATGTTGC CACTCTTGCT GGGTAAAGTG GGCCAGTCCG GAACCAATAC CGGTTTTCAG
CCTGCTAGAA ACGTCTACCC ATTGGCCTTC TCTCCAACCG GGGCTAACCC GGTTACCGCC
AAGATCCCCT GCTTCCTGTG GACTGATGCC GTTGTTCGGG GCGAGGAGAT GACCGCCACC
ACAGATGGTA TTCGTGGTGC AGAGAAGCTG TCGGCAAACA TCAAATTTAT CTGGAACTAT
GCGGGTAATG CCCTGATTAA CCAGCATTCA GATGTCAACA AAACTCATGA AATCCTTCAG
GATGAGTCTC TGTGTGAGTT TATTCTGGTG CACGATGTTC AGATGACGCC CAGTGCCAAA
TATGCAGATA TCCTATTGCC CGATCTGACC GACGCGGAGG GAACCGATAT CAGTGCCAAC
TCGGCGACCG AAGCCGGCGT GCTTACCGCC ATGACCTCGT CAGTCAATAC CCCGTTCAGT
GCTAAAGGTT GCTTCGAGGT GTGCCTGGAA ATTGCAAAAC GCCTGGGCGT TGAGCAGGAG
TATGCCGAGG GTAAGAATTA TCAACAATGG CTGGAGTCAC TTTACAACGA GGTAGCAGTC
AAGAAAGGCT ACCCAAATTA TGATGAGTTG GTGAAGATGG GGATCTACCG GGTCAAAGAC
ACCAAGCCCG TCATAGGTCT CAAATCCTAT ATTGATGATC CTGTTGCTAG CCCCCTGAGT
ACCCCGAGCG GAAAGATAGA GGTCTATTCT GAAACCCTGG ATACCATGTC AAAAACATGG
ACGCTCAATG AAGGGGATGA GATCCCGGCC ATTCCTAAAT ACATCAAGAC CTGGGAGGGA
TTTGAGGATC TTGAGACGAA GAAGCAATAC CCACTGCAGT TGATCGGTCA CCATGCCAAG
GGGCGTACTC ATTCCAGTTT CCACAGTAAC CCCTGGATGC GTGAAGCCGT CGAAGATGCC
GTATGGATGA ACCCTAAAGA TGCAGCAGCA CGGGGAATTT CCCAGGGAGA TGAAGTACTG
GTGACTTCGC TGCGCGGTAA GCTCAAGGTT CGTGCGCGAG TGACGCCAAG AATAATGCCA
GGGGTCACCT CTTTGCCACA GGGAGCCTGG ACGAAGAAAC AAGGTGATGT CGATGTCGGC
GGTTGCGTGA ATGCACTGAC CTCACAACGC CCCACAGCTA TCGGTAAATG TAACCCTCAA
CACACTAACC TGGTTGAAAT CAGCCTGTAT TGA
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| Protein sequence | MQRRDFLKLS AAAGAVSCVT ACGSKKTETV IPEVPVAEKI NWSSCTCNCG HSCPLKVVTR
DGKIARIESD DLGDDSWESH QSRACAKGRS TKKKVYAADR LKVPMKRVGK RGEGNFREIS
WEEAFDTIAA QLRRVIDTYG NESVYCQYAS GRLYSFFSGG HWAYGGLWGA KLLNILGGYL
GQYNTYSSGQ ASNAGQYTFG GRPASGYAEL RNSDLYLSFG HNPAETEMSG AGGSYALSVV
AKGVETYVVD PRYSDTAVSS QCHWLAIRPG TDGALCEALA YEIITQGAAD EAFLAKYCVG
YDQSTLPASA AANSDYKSHI LGQGPDGVVK TPEYAAAITG ICAEEIRLLA TKLIAAKAPF
ISQGLGVQRH ACGEQAVRSI LMLPLLLGKV GQSGTNTGFQ PARNVYPLAF SPTGANPVTA
KIPCFLWTDA VVRGEEMTAT TDGIRGAEKL SANIKFIWNY AGNALINQHS DVNKTHEILQ
DESLCEFILV HDVQMTPSAK YADILLPDLT DAEGTDISAN SATEAGVLTA MTSSVNTPFS
AKGCFEVCLE IAKRLGVEQE YAEGKNYQQW LESLYNEVAV KKGYPNYDEL VKMGIYRVKD
TKPVIGLKSY IDDPVASPLS TPSGKIEVYS ETLDTMSKTW TLNEGDEIPA IPKYIKTWEG
FEDLETKKQY PLQLIGHHAK GRTHSSFHSN PWMREAVEDA VWMNPKDAAA RGISQGDEVL
VTSLRGKLKV RARVTPRIMP GVTSLPQGAW TKKQGDVDVG GCVNALTSQR PTAIGKCNPQ
HTNLVEISLY
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