| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1383 |
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| Symbol | |
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| ID | 5612881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1645918 |
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| End bp | 1647147 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932248 |
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| Product | response regulator |
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| Protein accession | YP_001473122 |
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| Protein GI | 157374522 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.697135 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCAG TTTCTAATAT ACTAATCGTT GATGATACTG CTATTAGCCG TTTAATACTC
AGGGGGATGC TTGAGGATAA GTATCGTGTT ACCGAAGCTG ATAACGGTGA AACTTGCCTG
GCCATGGTAA AGGATTCAAT CCCCGACCTC TTACTGCTGG ATGTCGATAT GCCGGGGTTA
ACAGGTTATG AGGTGTGTGT CGCACTGAGA AAAGAATCTG CCACTGCAAA CTTACCCATT
ATTTTCGTAT CAGCTCTCGA TACCGTAGAG GAAAGGCTGG CAGGCTTCGA AGCCGGAGCC
GATGAGTACA TTGTCAAACC CGCAGAACCG GAAGCACTTA ATGCAAAGGT TGATACTTGC
CTCGAACGGT ATTTAGAGGT GTTTAATGCC GAGAAATCGG CATTAGAGGC TACTGAGATC
GCCATGGAGG CGATGACCGT CAGCAGTGAA TTAGGACAGG TGGTTAATTT TATTAAGGAC
GTACAATCCA TTGAACACCC CCATGAGGTG GGGCTTGCCA TCATAAGAAT TCTCAGGAAC
TTTGGGATGA ACTCTGTGGC GAGAATTGAC ACCGGCTCCG CTGTTTTTGT GGACTGCGGC
GAAGAGAGTA TAGAAGCACA AGTGCTTTCT CGGTTTGTTG TTCATAGTGA ACGAATATTA
AGTGTGGGGA TACGTACCGT TATCAGAGCG CCCCATATCG TCTTGCTGAT AAAGGATATG
CCATTAGATG ATGAAAAACG ATGCGGAAGG TTCAGGGATC ATATTGCTGT ATTAATGGAT
ATCGCCGGTG CTCACCTGGC TACCTTAAAA GCACGTGAGG AGATGGTTGA GCAAAGACAG
AACATTTTTA CTCAGGTCAT CGCCGTTGCT GAGAAGCAGT TGGAGTTAAC GACAGAGCGA
CTGTTTGAAC ATGACAGGCA TTCTCAAGGG ATCATGCATA GTATGGTCAA TCAATTAGAG
GGGATGCTTT TTGGACTCGG ACTGGAGGAA GATCAGGAGA AACAGCTTAT GGCTCTTGCA
GATCAGACAT CGTTAAAGAT AGAGGAGACT CAGGGCGAAA CACAGGTGGT GAGCAGAGAG
TTAGGGACGA TATTGGAAAG CTTATATGAT TTTTTCAATA CGCTTAACGA TAATACTCCC
CGTGACGATG TGTATGATAG CGCTTATGAA AAGACTGAGC ATAATGAACA CTCTAGCCCT
GAAGGAAACC CGGCCGATAT GAGGTTATGA
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| Protein sequence | MKPVSNILIV DDTAISRLIL RGMLEDKYRV TEADNGETCL AMVKDSIPDL LLLDVDMPGL
TGYEVCVALR KESATANLPI IFVSALDTVE ERLAGFEAGA DEYIVKPAEP EALNAKVDTC
LERYLEVFNA EKSALEATEI AMEAMTVSSE LGQVVNFIKD VQSIEHPHEV GLAIIRILRN
FGMNSVARID TGSAVFVDCG EESIEAQVLS RFVVHSERIL SVGIRTVIRA PHIVLLIKDM
PLDDEKRCGR FRDHIAVLMD IAGAHLATLK AREEMVEQRQ NIFTQVIAVA EKQLELTTER
LFEHDRHSQG IMHSMVNQLE GMLFGLGLEE DQEKQLMALA DQTSLKIEET QGETQVVSRE
LGTILESLYD FFNTLNDNTP RDDVYDSAYE KTEHNEHSSP EGNPADMRL
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