| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1376 |
|---|
| Symbol | |
|---|
| ID | 5612697 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1635409 |
|---|
| End bp | 1636704 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640932241 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473115 |
|---|
| Protein GI | 157374515 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATATA TTATGAATAA AACACTATTA GCTTTCTCTC TGCTCGTTTC ATTTGGCTCA
TCTGCGGCTG ATTTTCAGGG ACGAGATGCC ACTTTTTTAG AGAATGCAGC CCAGCATATG
ATCTCGGTTA AAAACTATGA TTCAGGGGAG AATGCTGCAT CTACCTTTCC CCATGCCTAC
AAGTTTACCC ATAGTTATCG CATCAGCCAC GGCCTTCTGG GAAGTGGGCA GGATGTGCTG
TCTCCTGAAG TATTAAAGAG TGATAAGCAA CTCGATTTCA GTAAGATTAT GATCACCGAT
ATTGATGGTC AGATGGATCT CAATACTTTT CTGCGGGATC GCCTGAAAAA CCATTCTATG
GTCGTGGTCA ATGGTGATCG TCTGTTGCAC GAACATTATT GGAATAACAT GGATGAACAC
TCTACCCACT TGATGATGTC GGTAACAAAG TCATTTACCT CGATGATGGC GGCGATTGCT
GTGAGTGAGG GAAAGCTGGA TATGAGCAAA CCCGTTATCC ACTATCTGCC CGAACTGAAA
GGTACTGCAT GGGAAACGGC AAGCGTACAG GAAGTGGCAG ATATGAGAAC CTCAGTGATC
CAGAAGGTCT CCAAGCATAA ATCCTGGGAT GACCGCATGA CACTATCTCA GTCCTATAAC
GGTGATACCG CTGGTGATTA CCCTCGTGGT GTGACGGATT ATTTTCCATT GGTGACTAAG
GTCGAAACAA AGATGGGTAA GAAATACACC TATCAATGTG TAAATACAGA AGTTTTAGGC
AAGGTGGTTG AAGCGGCGAC AGGAAAAAGA CTCGCAGACC TGATTGAGGA TAATATTTGG
AAGAAAGTCG GATTAGAAAA TGATGCCTTT CTAATGTCAG ATCATGTCGG TGGTGCCGTT
GCTTCGGGTG GACTGAATGC CGCGACTAAG GACATGGCCC GTATTGGTAA GGTGCTGATG
AATGATGGTA AGAACTATCT TGGAGAGCAA GTGATCCCAT CGGATTTTAT CTCTGGTCTA
TTACAAGGGG ATGATAACGT TCGCTCTGCA TGGAAACTCA GTAAGGAAGC CTCCCTTGCA
GATGGTTGGT ATAAGGACCA ATTTCGCCTA TTGAATGTAG GTGGTTACTC GATATTGGCA
ATGGTGGGTA TTCATGGGCA GGTTGTCGCT ATGGATAAAG CCAGTGGCAC CGTTATTGCG
ATGAATGGAG GTTATCCTAT GACAGAGACA CCGCGGATGG CTATTTCACT CTTTCATAAA
GTGATCCCGG CAATTCTTGA TGCTGTCGAG CATTAA
|
|---|
| Protein sequence | MEYIMNKTLL AFSLLVSFGS SAADFQGRDA TFLENAAQHM ISVKNYDSGE NAASTFPHAY
KFTHSYRISH GLLGSGQDVL SPEVLKSDKQ LDFSKIMITD IDGQMDLNTF LRDRLKNHSM
VVVNGDRLLH EHYWNNMDEH STHLMMSVTK SFTSMMAAIA VSEGKLDMSK PVIHYLPELK
GTAWETASVQ EVADMRTSVI QKVSKHKSWD DRMTLSQSYN GDTAGDYPRG VTDYFPLVTK
VETKMGKKYT YQCVNTEVLG KVVEAATGKR LADLIEDNIW KKVGLENDAF LMSDHVGGAV
ASGGLNAATK DMARIGKVLM NDGKNYLGEQ VIPSDFISGL LQGDDNVRSA WKLSKEASLA
DGWYKDQFRL LNVGGYSILA MVGIHGQVVA MDKASGTVIA MNGGYPMTET PRMAISLFHK
VIPAILDAVE H
|
|---|
| |