Gene Ssed_1347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1347 
Symbol 
ID5611728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1601711 
End bp1603633 
Gene Length1923 bp 
Protein Length640 aa 
Translation table11 
GC content49% 
IMG OID640932212 
Productglutathione-regulated potassium-efflux system protein KefC 
Protein accessionYP_001473086 
Protein GI157374486 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0475] Kef-type K+ transport systems, membrane components
[COG0569] K+ transport systems, NAD-binding component 
TIGRFAM ID[TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0230885 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.981976 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGCTT ATTTTATTCA AGCTTTTATC TACCTTTGCG CGGCGGTTAT CGCAGTGCCT 
TTGGCCAAAC GTTTTGGGTT AGGCTCTGTA CTGGGTTACC TGATGGCGGG AGTGGTTATC
GGTCCGATCA TCGGTCTGGT CGGCAGTGAA ACCAATACCT TGCAACATTT TGCCGAATTT
GGCGTGGTCA TGATGCTATT CCTTGTGGGA CTGGAACTCG AGCCACGAAT GCTTTGGGAT
ATGCGTAATA AACTTATCGG CTTAGGCGGC CTGCAGATAG GGTTAACGAC CGCAATCATT
ACCGCAGCAG GTATCTACTT TGGCTTAAGC TGGAGCATCG CACTAACGGT AGGCCTTATC
TTCGCGCTGT CTTCTACCGC CATCGTGCTG CAGACCTTTA ACGAGAAAGG CCTGTCAAAA
ACCGAAGGAG GAAAGAATGC ATTCTCGGTT CTCCTGTTCC AGGATATCGC CGTGATCCCC
ATGCTGGCGC TCATTCCACT ATTGGCACTA CCCGAGTTGG TCGAACAGGC ACAAGCCGCA
GTTGGCCAAG CCGCGCAGCA GCATGAAGAG CTCTCTTTAG TGGCCGGTTT GCCTGGATGG
GCTTATGGGA TCGTGGTCAT GTTGGCCATC GCAGCCGTTG TTGTCGGTGG GCATTATCTC
AGTCGTCCTC TGTTTCGATA TGTCGCAAGT TCGGGCCTGA GGGAAATTTT CACCGCCACT
GCGCTTATGC TGGTTATCGG CATAGCAGCA TTGATGAGTT TAGTTGGCCT ATCCCCGGCT
CTGGGTACAT TTCTAGCCGG TGTGGTACTG GCTAACAGTG AATTTCGTCA TGAACTTGAG
TCCAATATCG AACCTTTTAA AGGTTTATTG CTGGGACTAT TTTTTATCAC AGTTGGCGCA
GGCATCGACT TTGGAGTGTT AGCCGATAAT ATCGGCCCCG TGCTTGGGAT CACTGCCGGG
GTCATGCTGG TAAAAGCCCT GGTATTATTT CTGTTAGCGC TCATATTCAG AATTAAAAAC
AGCGATCGCT GGTTGTTTGC CCTGAGCTTA GCTCAAGCCG GGGAGTTTGG TTTCGTCCTG
CTCAGTTACA CGGTACAAAA CCACGTGATC CCTACCGATC TGGCCCAGAT GCTCTCATTG
GTGGTCGCCC TGTCTATGTT CCTCACACCT GGCCTGTTTA TCTTCTTCGA TAAGGTGATT
GTGCCAAGGT TTGAACATTT TGAAAATGAC CGAGAGACCG ACGAGATCAC CGAAAAGGGA
ACGGTGATCA TCGCAGGAAT TGGCCGCTTC GGCCAGATGG TGAATCGTTT CTTACGGGCC
AATAAAATCG ATACTGTGGT ACTGGATCAT CAGATATCTC AAGTTGAAAA CCTTAAAAAG
ATTAACGTTA AGAGCTTCTA TGGTGATGCG ACTCAACCAG ATCTGCTCCA CACCGCAGGT
ATCGAAGAAG CCACCATGCT GGTCATCGCC ATCGATAACA ATGAACGTGC GGTAGAACTG
ACAAAATATG TGAAGCACAC CTACCCGAAA GTGAAGGTTT TTGCCCGTGC ATTCGACAGA
GGGCACCACT TCGAACTTAA ACATGCCGGG GCAGACTTTA TCATCAGTGA AACCTACCAT
TCAGCCTTAG AGCTTGGTAA AGAGGCCTTG ATCTCCCTCG GGGTTCATCC GTTTAAAGCC
GAACAGAAGA AGGCCACCCT ACGCGAGCTG GAACTTTGTT ATAAAGATTC ACTGTTTGAG
TCCTGGAAAA AGAAAACCGA AGACAGCAAA TACAGCGCTC ACTTCAGAGA GTTGTTTATC
GAACTTGAAA CCGCCATAGC GAAAGCGATG AAGAGTGATC ACTTCGATGA GCAGGCAAGA
GTCGAACGCG GATGGACGCC GCCGCCTAAA GACTATGAAA AGGAGATGAA CAAAACGGAA
TAG
 
Protein sequence
MTAYFIQAFI YLCAAVIAVP LAKRFGLGSV LGYLMAGVVI GPIIGLVGSE TNTLQHFAEF 
GVVMMLFLVG LELEPRMLWD MRNKLIGLGG LQIGLTTAII TAAGIYFGLS WSIALTVGLI
FALSSTAIVL QTFNEKGLSK TEGGKNAFSV LLFQDIAVIP MLALIPLLAL PELVEQAQAA
VGQAAQQHEE LSLVAGLPGW AYGIVVMLAI AAVVVGGHYL SRPLFRYVAS SGLREIFTAT
ALMLVIGIAA LMSLVGLSPA LGTFLAGVVL ANSEFRHELE SNIEPFKGLL LGLFFITVGA
GIDFGVLADN IGPVLGITAG VMLVKALVLF LLALIFRIKN SDRWLFALSL AQAGEFGFVL
LSYTVQNHVI PTDLAQMLSL VVALSMFLTP GLFIFFDKVI VPRFEHFEND RETDEITEKG
TVIIAGIGRF GQMVNRFLRA NKIDTVVLDH QISQVENLKK INVKSFYGDA TQPDLLHTAG
IEEATMLVIA IDNNERAVEL TKYVKHTYPK VKVFARAFDR GHHFELKHAG ADFIISETYH
SALELGKEAL ISLGVHPFKA EQKKATLREL ELCYKDSLFE SWKKKTEDSK YSAHFRELFI
ELETAIAKAM KSDHFDEQAR VERGWTPPPK DYEKEMNKTE