Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1347 |
Symbol | |
ID | 5611728 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1601711 |
End bp | 1603633 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640932212 |
Product | glutathione-regulated potassium-efflux system protein KefC |
Protein accession | YP_001473086 |
Protein GI | 157374486 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0475] Kef-type K+ transport systems, membrane components [COG0569] K+ transport systems, NAD-binding component |
TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0230885 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.981976 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGCTT ATTTTATTCA AGCTTTTATC TACCTTTGCG CGGCGGTTAT CGCAGTGCCT TTGGCCAAAC GTTTTGGGTT AGGCTCTGTA CTGGGTTACC TGATGGCGGG AGTGGTTATC GGTCCGATCA TCGGTCTGGT CGGCAGTGAA ACCAATACCT TGCAACATTT TGCCGAATTT GGCGTGGTCA TGATGCTATT CCTTGTGGGA CTGGAACTCG AGCCACGAAT GCTTTGGGAT ATGCGTAATA AACTTATCGG CTTAGGCGGC CTGCAGATAG GGTTAACGAC CGCAATCATT ACCGCAGCAG GTATCTACTT TGGCTTAAGC TGGAGCATCG CACTAACGGT AGGCCTTATC TTCGCGCTGT CTTCTACCGC CATCGTGCTG CAGACCTTTA ACGAGAAAGG CCTGTCAAAA ACCGAAGGAG GAAAGAATGC ATTCTCGGTT CTCCTGTTCC AGGATATCGC CGTGATCCCC ATGCTGGCGC TCATTCCACT ATTGGCACTA CCCGAGTTGG TCGAACAGGC ACAAGCCGCA GTTGGCCAAG CCGCGCAGCA GCATGAAGAG CTCTCTTTAG TGGCCGGTTT GCCTGGATGG GCTTATGGGA TCGTGGTCAT GTTGGCCATC GCAGCCGTTG TTGTCGGTGG GCATTATCTC AGTCGTCCTC TGTTTCGATA TGTCGCAAGT TCGGGCCTGA GGGAAATTTT CACCGCCACT GCGCTTATGC TGGTTATCGG CATAGCAGCA TTGATGAGTT TAGTTGGCCT ATCCCCGGCT CTGGGTACAT TTCTAGCCGG TGTGGTACTG GCTAACAGTG AATTTCGTCA TGAACTTGAG TCCAATATCG AACCTTTTAA AGGTTTATTG CTGGGACTAT TTTTTATCAC AGTTGGCGCA GGCATCGACT TTGGAGTGTT AGCCGATAAT ATCGGCCCCG TGCTTGGGAT CACTGCCGGG GTCATGCTGG TAAAAGCCCT GGTATTATTT CTGTTAGCGC TCATATTCAG AATTAAAAAC AGCGATCGCT GGTTGTTTGC CCTGAGCTTA GCTCAAGCCG GGGAGTTTGG TTTCGTCCTG CTCAGTTACA CGGTACAAAA CCACGTGATC CCTACCGATC TGGCCCAGAT GCTCTCATTG GTGGTCGCCC TGTCTATGTT CCTCACACCT GGCCTGTTTA TCTTCTTCGA TAAGGTGATT GTGCCAAGGT TTGAACATTT TGAAAATGAC CGAGAGACCG ACGAGATCAC CGAAAAGGGA ACGGTGATCA TCGCAGGAAT TGGCCGCTTC GGCCAGATGG TGAATCGTTT CTTACGGGCC AATAAAATCG ATACTGTGGT ACTGGATCAT CAGATATCTC AAGTTGAAAA CCTTAAAAAG ATTAACGTTA AGAGCTTCTA TGGTGATGCG ACTCAACCAG ATCTGCTCCA CACCGCAGGT ATCGAAGAAG CCACCATGCT GGTCATCGCC ATCGATAACA ATGAACGTGC GGTAGAACTG ACAAAATATG TGAAGCACAC CTACCCGAAA GTGAAGGTTT TTGCCCGTGC ATTCGACAGA GGGCACCACT TCGAACTTAA ACATGCCGGG GCAGACTTTA TCATCAGTGA AACCTACCAT TCAGCCTTAG AGCTTGGTAA AGAGGCCTTG ATCTCCCTCG GGGTTCATCC GTTTAAAGCC GAACAGAAGA AGGCCACCCT ACGCGAGCTG GAACTTTGTT ATAAAGATTC ACTGTTTGAG TCCTGGAAAA AGAAAACCGA AGACAGCAAA TACAGCGCTC ACTTCAGAGA GTTGTTTATC GAACTTGAAA CCGCCATAGC GAAAGCGATG AAGAGTGATC ACTTCGATGA GCAGGCAAGA GTCGAACGCG GATGGACGCC GCCGCCTAAA GACTATGAAA AGGAGATGAA CAAAACGGAA TAG
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Protein sequence | MTAYFIQAFI YLCAAVIAVP LAKRFGLGSV LGYLMAGVVI GPIIGLVGSE TNTLQHFAEF GVVMMLFLVG LELEPRMLWD MRNKLIGLGG LQIGLTTAII TAAGIYFGLS WSIALTVGLI FALSSTAIVL QTFNEKGLSK TEGGKNAFSV LLFQDIAVIP MLALIPLLAL PELVEQAQAA VGQAAQQHEE LSLVAGLPGW AYGIVVMLAI AAVVVGGHYL SRPLFRYVAS SGLREIFTAT ALMLVIGIAA LMSLVGLSPA LGTFLAGVVL ANSEFRHELE SNIEPFKGLL LGLFFITVGA GIDFGVLADN IGPVLGITAG VMLVKALVLF LLALIFRIKN SDRWLFALSL AQAGEFGFVL LSYTVQNHVI PTDLAQMLSL VVALSMFLTP GLFIFFDKVI VPRFEHFEND RETDEITEKG TVIIAGIGRF GQMVNRFLRA NKIDTVVLDH QISQVENLKK INVKSFYGDA TQPDLLHTAG IEEATMLVIA IDNNERAVEL TKYVKHTYPK VKVFARAFDR GHHFELKHAG ADFIISETYH SALELGKEAL ISLGVHPFKA EQKKATLREL ELCYKDSLFE SWKKKTEDSK YSAHFRELFI ELETAIAKAM KSDHFDEQAR VERGWTPPPK DYEKEMNKTE
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