| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1321 |
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| Symbol | |
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| ID | 5610094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1571771 |
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| End bp | 1573585 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932186 |
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| Product | oxaloacetate decarboxylase |
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| Protein accession | YP_001473060 |
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| Protein GI | 157374460 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG5016] Pyruvate/oxaloacetate carboxyltransferase |
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| TIGRFAM ID | [TIGR01108] oxaloacetate decarboxylase alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0140986 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGC CACTTGCGTT AACTGATGTC GTCTTACGAG ATGCACACCA ATCAATCCTC
GCCACTCGTC TTCGCACCGA GGATATGCTC CCCATTGCAC CACTGTTGGA CAAAGTCGGC
TTCTGGTCTT TGGAGTCTTG GGGCGGGGCC ACATTCGACT CCTGTATTCG CTACCTGGGT
GAAGATCCTT GGGAGCGACT CAGAGAGCTA AAGAAGGCGA TGCCAAATAC GCCACAGCAG
ATGCTACTTC GTGGTCAAAA TCTGCTTGGT TACCGTCATT ATGCAGATGA TCTGGTACAT
AAGTTTGTCG AAAGGGCCCA CATTAACGGT GTGGATGTCT TTCGAATTTT CGATGCCATG
AACGATGTTC GCAATCTGGA AACCGCAGTA AAGTCTGTTA TTGAAGTTGG CGCACATGCG
CAGGGAACTA TCTCTTATAC AACCAGCCCG GTTCATACCC TCGAGACCTG GACCGATATG
GCTAAGCGTT TGGAAGATAT GGGCTGTCAT TCATTATGCA TTAAGGATAT GGCTGGATTG
CTTAAGCCCT ACGATGCGTT CGATATGATT AGTCAGATTA AATCTGAAAC AGATCTGATA
GTTTCAATGC AGTGTCATGC GACGACAGGG TTAAGTTCGG CGACATACCT TAAGGCCATT
GAGGCTGGGA TTGATGTGCT GGACACCGCC ATTTCGCCGA TGAGCCAGAC CTATGGACAC
AGTGCAACAG AGACGTTAGT TGCTATGGTG GAGGGGACAG AGAGAGCTAC TGGTTACGAT
ATGGCTTTGC TCGAAGAGAT TGCCGCTTAT TTTAGAGATG TACGAAAGAA GTATGCTCAG
TTCGAAGGTG AGTTAAAGGG GATCGATTCT CGGATTTTAC GAGCTCAGGT ACCAGGCGGC
ATGTTAACCA ATATGGAAAG TCAGCTTAAA GAGCAAGGGG CTGCCGATAA ATTAGACCAA
GTACTGGAGG AGATCCCAAG AGTACGTGAA GACTTAGGCT TCCTGCCATT GGTTACCCCT
ACATCACAAA TTGTGGGCAC TCAAGCTGTG ATTAATGTAT TGACCGGAGA ACGTTATAAG
TCGCTGACTA AAGAGACCGA AGGCGTGCTT AAAGGAGAGT ATGGTGCGAC ACCTGCGCCT
GTCAATGCAA CACTTCAAGC CAAGGTTCTC GATGGCGCCG AAGCCATCAC CTGCCGTCCC
GCAGATCTGT TGACTTCCGA GTTTGAAAAT CTTAGCGCTG AACTCCTTGA GAAGGCGCGC
AGTGAAGGGC TAACACTGGC TAAAGAGTTA GCCGATGATG TGTTGACCTA TGCGCTGTTT
CCGCAAATAG GCCTCAAGTT TATCAAGAAT CGTAATAACC CCGATATGTT CGAGCCTAAG
CCTGGGGCTA CGGCACAAGC TGAGGTACAA GCGAGTTCTG CAACGGCTTC GGGTACTGAT
CGCGGTCCCG AGACATATAC GGTAAATGTA CAGGGCCAAA GTTTCGTCGT TGAGGTCTCT
CCCGGTGGTG ATATCAATCA AATTACCCCC AGTGAGAACG TGGTTCCTTT CGTGGCACCT
CAAGCAAGTT CCGCTGCGGT TCAAGCGCCT GCGGGCGAAA TAAAATTAGA GATGAATGCA
CCCTTATCCG GCAATATATT TAAGGTCAAT GTTCAAACCG GCGATGCCGT TCGCGAAGGT
GATGTGGTTA TTATCTTAGA AGCGATGAAG ATGGAAACCG AAATCAGGGC CCAGTCTGAT
GGTGTCATCA GCAAAGTATG GGTAAAAGAG GGGGACTCTG TCTCCGTTGG TAATCAATTA
ATTGGCATAG CTTAG
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| Protein sequence | MSKPLALTDV VLRDAHQSIL ATRLRTEDML PIAPLLDKVG FWSLESWGGA TFDSCIRYLG
EDPWERLREL KKAMPNTPQQ MLLRGQNLLG YRHYADDLVH KFVERAHING VDVFRIFDAM
NDVRNLETAV KSVIEVGAHA QGTISYTTSP VHTLETWTDM AKRLEDMGCH SLCIKDMAGL
LKPYDAFDMI SQIKSETDLI VSMQCHATTG LSSATYLKAI EAGIDVLDTA ISPMSQTYGH
SATETLVAMV EGTERATGYD MALLEEIAAY FRDVRKKYAQ FEGELKGIDS RILRAQVPGG
MLTNMESQLK EQGAADKLDQ VLEEIPRVRE DLGFLPLVTP TSQIVGTQAV INVLTGERYK
SLTKETEGVL KGEYGATPAP VNATLQAKVL DGAEAITCRP ADLLTSEFEN LSAELLEKAR
SEGLTLAKEL ADDVLTYALF PQIGLKFIKN RNNPDMFEPK PGATAQAEVQ ASSATASGTD
RGPETYTVNV QGQSFVVEVS PGGDINQITP SENVVPFVAP QASSAAVQAP AGEIKLEMNA
PLSGNIFKVN VQTGDAVREG DVVIILEAMK METEIRAQSD GVISKVWVKE GDSVSVGNQL
IGIA
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