| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1318 |
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| Symbol | alaS |
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| ID | 5613885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1565532 |
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| End bp | 1568156 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932171 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001473057 |
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| Protein GI | 157374457 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0106685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00151314 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTATCAAA CCACTGCAGC GCTAAGAAGT GCTTTCTTAG AGTATTTCCG TACTAACGGT
CATCAGGTTG TGGACAGTAG TTCACTGGTA CCTGTTAACG ATCCTACCTT GCTGTTTACT
AATGCGGGTA TGAACCAGTT TAAAGATGTG TTTCTGGGTG AAGACAAGCG TAGCTATACG
CGTGCGACCT CGTCTCAGCG CTGTGTTCGC GCTGGTGGTA AACATAATGA CTTAGATAAT
GTGGGATACA CGGCTCGTCA CCATACATTC TTCGAGATGC TGGGTAACTT TAGTTTTGGT
GATTACTTTA AGCGTGATGC AATTAGTTTT GCATGGAACT TTCTTACTCA AGAGTTAAAG
CTGCCTAAAG AGCGTCTGTG TGTCACTATC TATGAGACCG ATGATGAAGC CTATGATATC
TGGACTAAAG AGATCGGCGT ACCTGCTGAA AACCTTATTC GCATAGGTGA CAATAAAGGC
GCACCATACG CGTCAGATAA CTTCTGGCAG ATGGGGGATA CCGGACCTTG TGGCCCATGT
TCTGAAATTT TTTATGACCA CGGTGACCAC ATCTGGGGTG GACGTCCGGG TACTCCGGAA
GAGGATGGTG ACAGATTCAT TGAGATCTGG AACATCGTTT TCATGCAGTA CAATCGCCAA
TCTGATGGTG AAATGTTACC ACTGCCTAAG CCTTCTGTGG ATACCGGTAT GGGTATTGAG
CGTATCGCTG CAATCATGCA GGGCGTTCAC TCTAATTATG AAATTGATAT ATTCCAGGCG
CTGATCAAGA AAACTGCCGA AATATTATCC GTTACTGATT TAGAAAATAA ATCGCTGCGG
GTTATCTCCG ATCACATCCG TTCATGTGCC TTCCTGATCG CCGATGGTGT TATGCCATCG
AATGAAGGTC GTGGTTATGT ACTTCGTCGT ATTATTCGTC GTGCGGTTCG TCATGGTAAT
AAACTTGGCG CTAGCGACTC CTTCTTCTAT AAGCTGGTAC CTACATTAAT CGAAGTCATG
GGCGATGCAG CCAAAGGGCT GGTGGCAACT CAAGCTATCG TTGAGAAGTC GTTGAAAGCC
GAAGAGGAGC AGTTTGCACG CACACTTGAG CGTGGCCTGG GCATTCTCGA TGGCGCGCTA
AACGCACTGA AAGGTGATGT ATTAGATGGT GAAACGGCAT TTAAGCTTTA CGATACCTAT
GGTTTCCCTG TCGATTTGAC CGCTGATGTC TGTCGTGAGC GTGAAATCAC CGTCGATGAG
GCGGGTTTTG AAGTCGCGAT GGCCGAGCAG AGAAGTCGTG CTCAGGCGGC AGGGCAGTTC
GAGACTGACT ACAATGATTC TCTGAAAATT GATGAACTGA CGCATTTTTC CGGTTATACC
GAGTTAACTG CACCTGGAAA AATTACCGCT ATCTATATGG CGGGTGAATC TGTCAATTCA
TTGAGCGCCG GAGATGAAGC CGTTATCGTT CTCGACAGCA CCCCTTTTTA TGGTGAGTCG
GGCGGTCAAT GTGGCGACAG AGGGGTATTG TCGGCTAAAG GTATCGAGTT TGATGTGAAG
GATACTCAAA AGTACGGTCA AGCCGTTGGG CATCAGGGAG CATTAACCTC AGGTACGTTA
TCTGTCGGTG ACAGCTTAGA AGCTAACGTC GATAAAAAGC TGCGTCATCG TACCGAGCTG
AACCACTCCG TGACTCACCT GTTGCACGCC GCACTACGCC AGTTACTGGG CACACATGTG
ACTCAGAAGG GCTCACTGGT TGACTCAGAA AGGTTGCGAT TCGATTTTTC TCATTTCGAG
GGTGTTAAGC CTGAGGAGTT GAAGGCGGTC GAAGATCTGG TGAATACTCA AATCCGTAGA
AACCACAAGC TCAGTGCCGA AGTGATGGAC ATGGATCAAG CGAAAGAGAA GGGGGCTATG
GCACTCTTCG GTGAGAAATA TACCGACGAA GTCAGAGTTG TCACTATGGG CGATTTCTCT
ATCGAGCTTT GTGGTGGTAC TCACGTCGGT CGCACCGGTG ATATCGGTCT GTTTAAGATC
ACCTCGGAAG GTGGTATTGC TGCTGGCGTG CGTCGCATCG AGGCGGTAAC TGGCGCGGCG
GCTATGGCCT ATGTAGCAGG GCAAAAAGCA GAGCTAGACC AGGCGGCAGC CTTACTTAAA
GCCGATAGTG CCTCTGTGGT ATCTAAGCTT AAGGCACAGC TGGATCGCAC TAAGCTGCTT
GAGAAAGAGT TATCTCAGCT TAAAGATAAG CTTGCTGCGG CCACAAGTGC CGATTTAGCG
GGCGAAGCGC AGCAGGTCAA CGGTGTGAAT GTGTTGGTTA AAAAGCTGGA CGGTGTCGAA
GCCGGTGCGC TACGTGGATT GCAAGATGAG CTGAAGCAGA AGCTTGGTTC TGGCATCGTG
GTTCTGGGTA TCGCCGGAGA TGCAAAAGTT AATCTGATCG TTGGTGTCAC TAAAGATCTG
ACCTCTAAAG TTAAGGCCGG TGAGCTGGTA GCCTCGATAG CATCACAAGT CGGTGGTAAA
GGCGGTGGTC GCCCAGACAT GGCGCAGGCC GGTGGTAGCC AACCAGAGAA CCTGGATAGT
GCCTTAGAGC AAGTTATCCC ATGGCTTACT GAGCGTTTGG CTTAA
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| Protein sequence | MYQTTAALRS AFLEYFRTNG HQVVDSSSLV PVNDPTLLFT NAGMNQFKDV FLGEDKRSYT
RATSSQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKRDAISF AWNFLTQELK
LPKERLCVTI YETDDEAYDI WTKEIGVPAE NLIRIGDNKG APYASDNFWQ MGDTGPCGPC
SEIFYDHGDH IWGGRPGTPE EDGDRFIEIW NIVFMQYNRQ SDGEMLPLPK PSVDTGMGIE
RIAAIMQGVH SNYEIDIFQA LIKKTAEILS VTDLENKSLR VISDHIRSCA FLIADGVMPS
NEGRGYVLRR IIRRAVRHGN KLGASDSFFY KLVPTLIEVM GDAAKGLVAT QAIVEKSLKA
EEEQFARTLE RGLGILDGAL NALKGDVLDG ETAFKLYDTY GFPVDLTADV CREREITVDE
AGFEVAMAEQ RSRAQAAGQF ETDYNDSLKI DELTHFSGYT ELTAPGKITA IYMAGESVNS
LSAGDEAVIV LDSTPFYGES GGQCGDRGVL SAKGIEFDVK DTQKYGQAVG HQGALTSGTL
SVGDSLEANV DKKLRHRTEL NHSVTHLLHA ALRQLLGTHV TQKGSLVDSE RLRFDFSHFE
GVKPEELKAV EDLVNTQIRR NHKLSAEVMD MDQAKEKGAM ALFGEKYTDE VRVVTMGDFS
IELCGGTHVG RTGDIGLFKI TSEGGIAAGV RRIEAVTGAA AMAYVAGQKA ELDQAAALLK
ADSASVVSKL KAQLDRTKLL EKELSQLKDK LAAATSADLA GEAQQVNGVN VLVKKLDGVE
AGALRGLQDE LKQKLGSGIV VLGIAGDAKV NLIVGVTKDL TSKVKAGELV ASIASQVGGK
GGGRPDMAQA GGSQPENLDS ALEQVIPWLT ERLA
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