Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1315 |
Symbol | |
ID | 5611304 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1560187 |
End bp | 1560951 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640932168 |
Product | hypothetical protein |
Protein accession | YP_001473054 |
Protein GI | 157374454 |
COG category | [S] Function unknown |
COG ID | [COG4922] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000687545 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACAAA CAGCCATAAA AGCACAAGAC GCTTTTTTTA AAGATTTTGA TGCTGTAAAA ATGAAAGAGT ATTACCGTGA AGATTATATT CAACACAACC CCCATGTACC AACAGGTCTA GCACCAGCAA TCGGATTTTT ACCGGTATTA AAAGAAGCTG GTCTAACCTA TAAAAACCAT CGTTTATTGG TAGATGGTGA CTTCATTGTT ATGCATAACA CTTATAATAA TGCTGAAGCA TTTGGCGCTA AAGAGGTGGT AACGTTTGAT GTATGGCGCA TGCAAGGTGG CCAAGTTGCC GAGCATTGGG ATGCCATTTC TCCTGTTATT AAAGAAACGG CAAGTGGGCG CTCACAATTC GACGGCCCAA CACTGGTTAC TGACACCGAC AAAACTAAAG ACAATAAACA ATTAATTGCT AACTTTATGG AAGATGTATT TTTTGGCAAA GCGCCTGAAA AAATCACTGA ATACATCAGC ACAGAGCAAT ATGATCAACA TAATACAATG GTAAAAGACG GTTTAGATGG CCTAAATGAC GCCCTTGCCT ATCTTGCATC ACAAAATAAT ATGTTCGATT ATCACAAAGT TCACCGTATT CTCGGCGAAG GTAATTTTGT TTTAACTCAA AGCGAAGGGC GTTGGAATGA TAAACCACAA GCCTTCTATG ATCTATTCCG CATTAAGGAT GGAAAAATTG TAGAGCATTG GGACATCATT CAAGAAGTAC CCGCCGAAAT GGCTCACGAT AACGGTATGT TTTAA
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Protein sequence | MKQTAIKAQD AFFKDFDAVK MKEYYREDYI QHNPHVPTGL APAIGFLPVL KEAGLTYKNH RLLVDGDFIV MHNTYNNAEA FGAKEVVTFD VWRMQGGQVA EHWDAISPVI KETASGRSQF DGPTLVTDTD KTKDNKQLIA NFMEDVFFGK APEKITEYIS TEQYDQHNTM VKDGLDGLND ALAYLASQNN MFDYHKVHRI LGEGNFVLTQ SEGRWNDKPQ AFYDLFRIKD GKIVEHWDII QEVPAEMAHD NGMF
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