| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1309 |
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| Symbol | |
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| ID | 5611340 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1554850 |
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| End bp | 1555464 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640932162 |
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| Product | cytoplasmic chaperone TorD family protein |
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| Protein accession | YP_001473048 |
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| Protein GI | 157374448 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3381] Uncharacterized component of anaerobic dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000480203 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAACCA AACATCAATT ACTACTGGCA AGTGCTGCCT CAGGCATACT GCATAATGTG
TTTTATTCAC GACCAACTCC TGAATTTTTG TGTTCATTAT CATCTATACT TAAGCAGTGG
CCGTTACAAA CAGTCCCTAG CAAAATGGCC ATAGAACATA TTGTTAATTC AATAGAAATC
GATGATGTGA CTACGCTTGA CGAAGACTAC CATGCTTTAT TTGTTGGCCC TGGGAAACGA
CACGCTTATC CTTGGGGGTC TGTCTATACC GATAAGGAAA AGTTGCTGTT TGGAGATTCA
ACTGTAGCTT TTGAACATTT TTGTCTCTCT CATGGTATCG AATTTGAGCT TGATGGCAAC
GAACCTACAG ACCATGTAGG TTTACTTCTT GGAGCACTGA GCACCTTACT GAAACAATCA
GACCCAGAGC ACCTTCAAGC CGTATCATCA TTATTAGAAG TGCATTTGCT TCCTTGGGTT
AGTGCATTTT TAGATGCTGT CGATGAAAAT TCTGTCACTG GGTATTATCG AGGCTTCTCC
AAACTGTTGC GTATTTGGAT TAACGATTGG GAATTAAATT TAAAACTTAA CCCCACAAGC
ACTCGTTTAT ATTGA
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| Protein sequence | MQTKHQLLLA SAASGILHNV FYSRPTPEFL CSLSSILKQW PLQTVPSKMA IEHIVNSIEI
DDVTTLDEDY HALFVGPGKR HAYPWGSVYT DKEKLLFGDS TVAFEHFCLS HGIEFELDGN
EPTDHVGLLL GALSTLLKQS DPEHLQAVSS LLEVHLLPWV SAFLDAVDEN SVTGYYRGFS
KLLRIWINDW ELNLKLNPTS TRLY
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