| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1301 |
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| Symbol | |
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| ID | 5614123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1545549 |
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| End bp | 1546142 |
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| Gene Length | 594 bp |
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| Protein Length | 197 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932154 |
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| Product | transposase IS116/IS110/IS902 family protein |
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| Protein accession | YP_001473040 |
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| Protein GI | 157374440 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3547] Transposase and inactivated derivatives |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000147857 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGTTTTG TTCAACTAAA GCCAGTCAAG CAGCAAGACT TACAGATGCT TCATCGAATG
AGGGAACGTT TAAACAAACA GTCTACCGCC TTAATTAATC AAGTTAGAGG TATGTTGACC
GAGTACGGCA TTGCGATAGC AAAAAGCAAA GCGGCTTTTA GGACGACTTT TCCAGATATT
TTAGCTGATG AGGACAATGA ACTTACAGTG AAGGGGCGGT TTATATTTAA TGAGCTTTAT
GAAGAGTTTA CAGATATCGA GAAGCGACTC AAAAGCTGCG ACGACCAAGT GCTAGAAGAG
AGAAAAGAGA ACCAAATTTG CCAACGTTTA GAAACTGTTC CCGGCATTGG TCCTGTGACT
TCAACAGCTT TTTACGCAGC AGCTGGAGAA GGAAAAGATT TTACCAACGG TAGACATTTT
TCAGCTTGGT GCGGCTTAGT GCCAAAGCAA CATAGCAGTG GCGGTAAAGA TAACCTGCTA
GGAATAAGCA AAAGAGGCAA GGTTAATGAT ATCTTTATCC AGCCCCTTTT GGGCCATAAC
CAGCCTTATC CGTGTCGGAC CATGGCCTTT ACTGATGTGA CTGCAGATGA GTAA
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| Protein sequence | MRFVQLKPVK QQDLQMLHRM RERLNKQSTA LINQVRGMLT EYGIAIAKSK AAFRTTFPDI
LADEDNELTV KGRFIFNELY EEFTDIEKRL KSCDDQVLEE RKENQICQRL ETVPGIGPVT
STAFYAAAGE GKDFTNGRHF SAWCGLVPKQ HSSGGKDNLL GISKRGKVND IFIQPLLGHN
QPYPCRTMAF TDVTADE
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