| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1299 |
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| Symbol | |
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| ID | 5611195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1541354 |
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| End bp | 1543933 |
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| Gene Length | 2580 bp |
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| Protein Length | 859 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932152 |
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| Product | DNA mismatch repair protein MutS |
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| Protein accession | YP_001473038 |
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| Protein GI | 157374438 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
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| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.537227 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000408163 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGCTA TCGATACCCA AAATTTAGAA AAACACACAC CTATGATGCG TCAATACCTG
ACGCTAAAAG CTGAACATCC GGAGATGCTG CTCTTTTATC GCATGGGTGA TTTCTATGAA
CTTTTTTATG ATGACGCTAA AAAGGCTTCT GAATTATTGG GGATCTCACT CACTGCCAGA
GGAAAAAGTG GCGGCGATCC CATTCCTATG GCGGGCCTGC CTTATCATGC GGTTGAAGGA
TATTTAGCCA AGCTGGTCCA ACTCAGGGTG TCTGTCGCCA TTTGCGAACA AGTGGGCGAT
CCGGCGACAT CTAAGGGACC GGTTGAGAGA AAGGTCGTAC GCCTTGTGAC GCCCGGTACA
TTGACCGACG AGGCCCTGCT GCAAGAAAAA CAGGATAACT TGCTCGCCGC CGTTTATCAT
GGCAAGAGCG GATATGGGTA CGCCACCTTA GATATCAGCT CGGGTCGATT TGTCGTCGCA
GAACTTGCCT CGACCGAGGC ACTTGAAGCC GAGCTGCAAC GGACTAACCC TGCCGAGCTA
CTCTATAGCG AAGATTTCTC TGAGATGGGA TTAATCTCCG GTTTTAACGG TAAACGCAGA
CGTCCTGAAT GGGAGTTTGA TTTCGATACC AGCCAAAAAT TACTTCTGGA TCAATTCGGC
ACAAAAGATC TCCGTGGTTT TGGCCTGGAC AATGCGCGCC TCTCACTTCA AGCTGCCGGC
TGTTTAATGC AGTACGTGAA AGACACGCAA CGAACGGCAT TGCCACATAT TAATTCAATC
GTTCGCTTCA ACCAAAGTGA CAGTATCGTC CTTGATGCCG CAACCCGGCG TAACCTCGAA
CTCACGGTAA ACCTCCAGGG CGGTCATGAA AATACCTTAG CCTCTGTACT GGATAATACG
GCAACGCCTA TGGGTAGCCG TATGCTTCAG CGCTGGATCC ATGAGCCACT AAGAAACCAA
CAGCAGATCG AGTCTCGTCA GAGTGCATTA ACCGAGATAT TAGACACTAA TCTGTTCGAG
ACCCTCGAAC CTCAGCTAAA AGCTTTGGGC GATGTCGAGC GGATCACCGC AAGGTTGGCC
CTTCGTAGCG CAAGGCCAAG AGATTTTGCC CGCCTGAAGC AAGCCATATC CCTGTTACCC
GAAATTCAGC AATCTCTTGC TAACTGCCAA TCGGCTCACC TGCATCATCT GGCAAGAATG
CTCGGCGAAT TCCCCGATGA ACTTGAGCTA TTAGAGCGCG CGATTGTAGA TAACCCTCCA
ATGCTTATCC GCGACGGTGG CGTACTTAAA GAGGGCTATA ATGCCGAGCT GGATCAATGG
CGAGCACTGA GTCAAGGCGC GACCGATTAT CTGTCTGAGC TCGAAGCCAG AGAGAAAGAG
CAAACCGGTA TATCGACACT TAAGGTCGGC TATAACCGGG TCCATGGCTA CTATATTGAG
GTCAGCCGAA GAGAGTCTGA TCTGGTTCCA CTGAGCTATC AGCGCAGACA GACACTCAAA
AATACTGAGC GCTACATCAT CGCAGAGCTT AAAGAGCATG AAGAGAAAGT GCTATCCAGT
CAGGGAAAGG CGCTGGCACT CGAGAAACAG TTGTGGGAAC AACTCTTCGA TCAGATACTG
CCTAAGCTTC ATGACTTACA ACTATTTGCA CAGGGCGCCG CCGAGCTCGA TGTAATAAAT
AACTTCGCCG AGCGTGCCGA AACATTAAAT TACAGCTGCC CGACACTATC ACAAAAATCC
GGTATACATA TAGAAGGCGG GCGTCACCCT GTTGTGGAAC AGGTGAGCCA AACGCCATTT
ATTGCTAACC CGGTCACCTT GAATCCTGCA CGAAAAATGT TAATCGTGAC CGGACCGAAT
ATGGGCGGTA AATCTACCTA CATGCGCCAG GTAGCCTTAA TTACTTTAAT GACGCACATA
GGTTGTTATG TACCCGCCCA GAGTGCAGTA ATCGGTCCTG TTGACCGCAT ATTTACCCGT
ATCGGTGCAG CCGACGATCT TGCTTCGGGT CGTTCAACTT TTATGGTTGA GATGACTGAA
ACGGCAAATA TTCTTCATAA TGCCACCACG GAAAGTCTGG TACTGATGGA TGAGATTGGT
CGAGGAACCT CGACATATGA TGGTCTCTCT CTGGCCTGGT CAGCTGCCGA ATATTTAGCT
CAGAAAATTG AAGCTATGAC CCTATTTGCC ACTCACTATT TCGAACTGAC TCAACTTCCC
GAGCTCATAT CCAACGTTGA AAATGTGCAC CTTGACGCTA TCGAGCATGG TGACACTATT
GTGTTTATGC ATGCTGTTCA GGAAGGCGCT GCAAGTAAAA GTTATGGTTT GCAGGTTGCC
GCACTGGCAG GGGTTCCAGG CAAGGTCATT ACCGCCGCAA AGCATAAGCT ACACCACTTA
GAAAGTCGTG ACACGAACAG CGCCGTAGAC TCGATGACTA CCTCAAATCA ACAGAGTATG
GTATTTGATG AACCAGTAAA TTCCGCCTTA AATGACGCAT TAGATAAGAT ACATCCCGAT
GAATTGAGCC CAAGACAGGC ACTCGATATC TTGTATGAGC TTAAGCGGTT AACGAGCTAA
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| Protein sequence | MNAIDTQNLE KHTPMMRQYL TLKAEHPEML LFYRMGDFYE LFYDDAKKAS ELLGISLTAR
GKSGGDPIPM AGLPYHAVEG YLAKLVQLRV SVAICEQVGD PATSKGPVER KVVRLVTPGT
LTDEALLQEK QDNLLAAVYH GKSGYGYATL DISSGRFVVA ELASTEALEA ELQRTNPAEL
LYSEDFSEMG LISGFNGKRR RPEWEFDFDT SQKLLLDQFG TKDLRGFGLD NARLSLQAAG
CLMQYVKDTQ RTALPHINSI VRFNQSDSIV LDAATRRNLE LTVNLQGGHE NTLASVLDNT
ATPMGSRMLQ RWIHEPLRNQ QQIESRQSAL TEILDTNLFE TLEPQLKALG DVERITARLA
LRSARPRDFA RLKQAISLLP EIQQSLANCQ SAHLHHLARM LGEFPDELEL LERAIVDNPP
MLIRDGGVLK EGYNAELDQW RALSQGATDY LSELEAREKE QTGISTLKVG YNRVHGYYIE
VSRRESDLVP LSYQRRQTLK NTERYIIAEL KEHEEKVLSS QGKALALEKQ LWEQLFDQIL
PKLHDLQLFA QGAAELDVIN NFAERAETLN YSCPTLSQKS GIHIEGGRHP VVEQVSQTPF
IANPVTLNPA RKMLIVTGPN MGGKSTYMRQ VALITLMTHI GCYVPAQSAV IGPVDRIFTR
IGAADDLASG RSTFMVEMTE TANILHNATT ESLVLMDEIG RGTSTYDGLS LAWSAAEYLA
QKIEAMTLFA THYFELTQLP ELISNVENVH LDAIEHGDTI VFMHAVQEGA ASKSYGLQVA
ALAGVPGKVI TAAKHKLHHL ESRDTNSAVD SMTTSNQQSM VFDEPVNSAL NDALDKIHPD
ELSPRQALDI LYELKRLTS
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