| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1298 |
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| Symbol | |
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| ID | 5611194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1540150 |
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| End bp | 1541121 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932151 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001473037 |
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| Protein GI | 157374437 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.915931 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000172563 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTCGTA AAAACAGTAC CGCAATAGCG GAGCCTTTAG TGGACTTGTC TAAGAACGAG
TCTGATAGTG TCACTAAGAA AGGAAATAAA GCACAAGAAA ATGAGCTTGA ACAGCAAGTG
CAGGATGATT TACAAAAAAA TCTGGATGCT ACTCAGCTGT ACTTAAGTGA AATTGGTTTT
TCCCCCCTAC TGAGTGCGGA AGAAGAGGTT TATTTTTCCC GTAAAGCCCT AAAAGGCTGC
GGAAAATCTC GTAATCGCAT GATAGAAAGT AATCTAAGAC TTGTCGTCAA AATTGCCCGT
CGTTATAACA ATCGTGGTTT AGCGCTATTG GATCTCATTG AAGAGGGAAA TCTAGGCTTG
ATCAGGGCTG TTGAGAAGTT TGATCCCGAG AGAGGGTTCC GTTTTTCAAC CTATGCAACC
TGGTGGATCA GGCAGACTAT TGAACGTGCG ATCATGAATC AAACCAGAAC GATTCGTTTA
CCGATCCATG TGGTTAAAGA GCTCAATGTT TATCTGCGTA CTGCCAGAGA GCTGGCACAT
AAGCTAGATC ATGAGCCAAC GGCTGAAGAG ATCGCAGAAA AGCTTGATCT TCCCAGTGCA
GATGTCAGCC GCATGTTAAA GCTAAATGAA CGGATCACTT CAGTTGACAC GCCCTTAGGT
GGAGATAATG ATAAGGCATT ACTCGATGTG CTTGCCGATG ATGATAGTGT TGGCCCGGAC
TATAAAGTTC AAGATGAGGA TATGTCTAAA TCGGTAGTAA AATGGTTAGA TGAACTCAAT
ACAAAACAGA GAGAGGTGTT AGCGCGCCGT TTTGGATTGT TGGGATATGA ACCATCGACA
CTTGAAAATG TGGGCAAAGA GATTGGGTTA ACCAGAGAGC GAGTTCGTCA GATCCAGGTA
GAAGCATTAA AACGACTCAA AGATCTGCTC GGATCTCAGG GATTATCGGT TGAGGCTATT
TTTAAAATTT AG
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| Protein sequence | MGRKNSTAIA EPLVDLSKNE SDSVTKKGNK AQENELEQQV QDDLQKNLDA TQLYLSEIGF
SPLLSAEEEV YFSRKALKGC GKSRNRMIES NLRLVVKIAR RYNNRGLALL DLIEEGNLGL
IRAVEKFDPE RGFRFSTYAT WWIRQTIERA IMNQTRTIRL PIHVVKELNV YLRTARELAH
KLDHEPTAEE IAEKLDLPSA DVSRMLKLNE RITSVDTPLG GDNDKALLDV LADDDSVGPD
YKVQDEDMSK SVVKWLDELN TKQREVLARR FGLLGYEPST LENVGKEIGL TRERVRQIQV
EALKRLKDLL GSQGLSVEAI FKI
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