| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1297 |
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| Symbol | |
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| ID | 5611193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1539159 |
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| End bp | 1540073 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932150 |
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| Product | peptidase M23B |
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| Protein accession | YP_001473036 |
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| Protein GI | 157374436 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.353225 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000164338 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGTAGTTG CGTTTAAGAC CTGTTGGGGC GGTCTGTTTT TTTGCTTCCT ATCGCTAATT
TTAGTCGGCT GCAGTTTTCA GTCTGATAGG CCTGCACCTG TGGCAAGCGT CAATATTCCT
GTTAAGACAG CTTATAACAA AGGTTCATTA AAATCTGATT CTTATCGCGT AAAGCAAGGT
GATACCCTCT ACTCAATAGC GTGGGCATCT AACAATGATT TCATTAAATT AGCTAATAAA
AACAAGCTGA AAAAGCCCTA TACTATCTTC CCCGGTCAGA AACTTAACCT TAATTTGACA
CGCCCTGTTA CAAATAGTCA ACAGTCTAAA AGCGCGTCAA ATAATAGTCC GAAAGTTGTA
CCTGTGAAGC AGAAAGTCGC TAATAAACAG GTGGATAGTA GGCATGTTTC GGCTCGGGAA
GTAAAAGCGA CACAGTCAAA AAAATCACTT GATCAACATC GCAAGTCTGC GTATTCTGTA
ACAAGCAATC AACAAGATGT TAACCAGCCT ATCCACAGGC CAACGAGTAC CCTTCCAAAG
AAGGTAAGCA AGTGGCAGTG GCCAAGGAGA GGCAAGTTGA TTGGCACTTT CTCTGCCAAA
GAGCAGGGGA ATAAAGGAAT TAAGATAGCA GGGAATCGTG GTGACATCAT AAAATCCGCA
GCCGATGGGC GTGTTGTTTA TGCGGGAAGT GCACTTCGAG GCTATGGAAA CTTAGTCATT
ATCAAACACA GTGATGATTA CTTAAGCGCC TACGCACATG CTGATAAGAT CTTAGTCAAA
GAGAAGCAGT TTGTAGCAGT AGGGCAAACG CTGGCAAAAA TGGGTAGTAC GGGTACTGAT
CGGGTTATGC TACATTTTGA GATCCGTTAC CATGGAAAAT CCGTTAACCC ACTAAAATAT
TTACCTAAAC AATAA
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| Protein sequence | MVVAFKTCWG GLFFCFLSLI LVGCSFQSDR PAPVASVNIP VKTAYNKGSL KSDSYRVKQG
DTLYSIAWAS NNDFIKLANK NKLKKPYTIF PGQKLNLNLT RPVTNSQQSK SASNNSPKVV
PVKQKVANKQ VDSRHVSARE VKATQSKKSL DQHRKSAYSV TSNQQDVNQP IHRPTSTLPK
KVSKWQWPRR GKLIGTFSAK EQGNKGIKIA GNRGDIIKSA ADGRVVYAGS ALRGYGNLVI
IKHSDDYLSA YAHADKILVK EKQFVAVGQT LAKMGSTGTD RVMLHFEIRY HGKSVNPLKY
LPKQ
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