| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1293 |
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| Symbol | ispF |
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| ID | 5611178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1536056 |
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| End bp | 1536541 |
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| Gene Length | 486 bp |
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| Protein Length | 161 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932146 |
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| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_001473032 |
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| Protein GI | 157374432 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000135197 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAATATAC GTATAGGTCA TGGTTTCGAT GTGCATAAGT TTGGTGGCGG CTCTCCCCTC
TTGTTAGGCG GGGTTCATAT CCCCTATGAG ACAGGCCTTA TTGCGCACTC CGATGGTGAC
GTGGTGCTAC ATGCTATTTC AGATGCTGTT CTCGGAGCCG TTGCGCTTGG AGATATCGGC
AAGCATTTTC CCGATACCGA TGAGGAGTTT AAGGGAGCCG ATAGTCGTCA TCTACTGCGT
CATTGTTATC GATTAGCGAA AGAAAAGGGC TATTCGATGG GTAACCTCGA TGTCACTATC
ATTGCACAAG CCCCTAAAAT GGCCCCCCAT ATTGAGGCGA TTCGTGAGGT TTTAGCGCTC
GATTTTGAAA CCGATACTGA CAATATCAAT GTAAAGGCAA CAACGACCGA AAAACTTGGC
TTTACGGGAC GTAAAGAGGG CATTGCCGTT GAAGCCGTTG TGCTTCTCGT TAAGTCAGCC
GATTAA
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| Protein sequence | MNIRIGHGFD VHKFGGGSPL LLGGVHIPYE TGLIAHSDGD VVLHAISDAV LGAVALGDIG
KHFPDTDEEF KGADSRHLLR HCYRLAKEKG YSMGNLDVTI IAQAPKMAPH IEAIREVLAL
DFETDTDNIN VKATTTEKLG FTGRKEGIAV EAVVLLVKSA D
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