| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1292 |
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| Symbol | ispD |
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| ID | 5611177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1535266 |
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| End bp | 1535970 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932145 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_001473031 |
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| Protein GI | 157374431 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000161143 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAATGACA GCCAAGATAA GATTGTCGCT ATCGTACCCG CTGCCGGAAT AGGTAGCCGA
ATGGGAGCCG AGATCCCCAA GCAATATCTA CTGATTGATG AGAAGACCAT TTTACAATTA
ACACTGGAAC TGCTGTTAAC TCATCCAAAA ATAGATTGTG TGGTCGTTGC ACTCCATCCG
GAAGATCAAT TTTTTAAAGG CTTACCCCTT TCATCACATC ACAAGTTACA CACAGTTGTT
GGCGGCTCTG AGCGAGCCGA TTCAGTTCTG GCTTGCTTGA ATCATCTCGG TGGTGATTGT
TGGGCTATGG TGCACGATGC CGCTCGCCCC TGTTTGACTC ATGGTGATAT CGATAAGCTC
ATTGCATCGC GGCAACGTTT TCCGCAAGGT GCAATTTTAG CAGCGCCGGT CAGGGACACA
ATGAAACGTG GCAATGCTGA CGGAACCGTA AAAGAGACTG TGTGTCGTGA ACGATTATGG
CATGCGTTAA CCCCTCAGCT TTTTCCGGCT GCCCTTCTTA AAGGTAATCT CGAACAAGCG
TTAGCTCAGG GGGCTAATAT TACCGATGAA GCCTCTGCGA TGGAGTGGGC CGGCGTGTCT
CCTGGATTGG TGGACGGCAG AGTCGATAAT ATCAAGATCA CTCATCCGGA TGACCTTTTA
TTGGCTGGAT TATTCTTAGG AAATGCGCAC AGCTTAGAGC GGTAA
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| Protein sequence | MNDSQDKIVA IVPAAGIGSR MGAEIPKQYL LIDEKTILQL TLELLLTHPK IDCVVVALHP
EDQFFKGLPL SSHHKLHTVV GGSERADSVL ACLNHLGGDC WAMVHDAARP CLTHGDIDKL
IASRQRFPQG AILAAPVRDT MKRGNADGTV KETVCRERLW HALTPQLFPA ALLKGNLEQA
LAQGANITDE ASAMEWAGVS PGLVDGRVDN IKITHPDDLL LAGLFLGNAH SLER
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