| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1279 |
|---|
| Symbol | |
|---|
| ID | 5613731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1517782 |
|---|
| End bp | 1518276 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640932132 |
|---|
| Product | phosphatidylglycerophosphatase |
|---|
| Protein accession | YP_001473018 |
|---|
| Protein GI | 157374418 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1267] Phosphatidylglycerophosphatase A and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0214485 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000000064326 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAATATAT TCTCCAAAGA TGAAGCGTTA ACTCGTCTTT CACTAGCTAA TCCCGTTCAT
TTTTTGGCTT TAGGTTTTGG TTCTGGCCTG GCAGCTAAGG CTCCCGGGAC TTTTGGCACC
TTGGCTGCCA TTCCCTTGTA CCTAATCATG GCTCCCTTGA GCTTGCCTTG GTATCTGGCG
CTAACACTTT TGAGTGTGAT TGCCGGTTTT TATATCTGTG ACAAGGCAGC TAAAGATATG
GGCGTACATG ACCATGGCGC AATTGTCTGG GATGAGATAG CCGGTCTGCT GATCACTATG
ATTGCGGCGC CAGCTGGCTG GGTTTGGTTA CTGGTTGGTT TCGCCCTGTT TCGCTTTTTC
GATATCATTA AGCCTTGGCC TATTCGTTGG TTAGATGCCA AGGTAAAAGG TGGCTTTGGT
ATCATGATAG ATGATGTACT TGCGGGGGGC TTCGCTCTTG CTTGCCTGCA GGGGCTAGCC
TACTATTTGG GGTAA
|
|---|
| Protein sequence | MNIFSKDEAL TRLSLANPVH FLALGFGSGL AAKAPGTFGT LAAIPLYLIM APLSLPWYLA
LTLLSVIAGF YICDKAAKDM GVHDHGAIVW DEIAGLLITM IAAPAGWVWL LVGFALFRFF
DIIKPWPIRW LDAKVKGGFG IMIDDVLAGG FALACLQGLA YYLG
|
|---|
| |