| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1278 |
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| Symbol | |
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| ID | 5611102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1516823 |
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| End bp | 1517782 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932131 |
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| Product | thiamine-phosphate kinase |
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| Protein accession | YP_001473017 |
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| Protein GI | 157374417 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0611] Thiamine monophosphate kinase |
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| TIGRFAM ID | [TIGR01379] thiamine-monophosphate kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000168907 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000863796 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | GTGAAAGAAT TCCAATTAAT AGAAAACTTC TTCACTAATC GTTCTCTCTC TCGCCGTGAT
GTAGAGCTAA GCATAGGTGA TGATTGCGCG TTGGTTCAGC CTGCTGTGAA TAAATCTATC
GCCATCTCTT GCGATACCTT GGTTGAGAAT GTCCACTTTT ATCCCGATAT TCCACCTCAG
GCTCTGGGGT ACAAATCACT AGCAGTCAAT CTTTCCGATC TCGCCTCCAT GGGCGCAGAA
CCTGCCTGGA TGACACTGGC ATTAACCCTA CCGGATGTGA ATGAGCAATG GCTGACAGAG
TTCAGCTCAG GTTTGTTCGA TGCAGCCGAG TATTATGGGG TGGCATTAAT TGGGGGCGAT
ACGACTCGCG GACCTCGCTC AATTACTATT ACGATAAACG GCCAAGTTCC TACGGGAAAA
GCGTTAACCC GTGGCGGAGC CAAAAATGGT GATTGGATCT ACGTCACCGG TACCATTGGT
GATTCGGCCC TTGGACTCGA TGTGATTCGT GGTAAGCGAC ACGTCGATCC TGAGCACCAT
GAATATCTGG TTAACCGGCA TTATTACCCG ACGCCGCGCG TGCTTGCGGG ACAATCTTTA
AGAGGGCTGG CATCGAGTGC TATCGATCTT TCCGATGGTT TGGCATCTGA CATTAAACAT
ATGCTTAAAC GTTCACAAGT CGGCGCCGTG ATTGATGTTA ATCGGTTGCC CATATCGAGT
GCGGTGACAG ACTCCGTGTC AAAGGATGAA GCATTAAACT ACGCTTTAAT GGGCGGAGAA
GATTACGAGT TACTGTTTAG TGTTCCGGAA GCGCAGAAGG GAGCGCTCGA AACGGCCTTG
GCCAATGCCG GAGTCCAGTT TACTCAAGTA GGACAGATCA CTACGGGTGA TTCTGTAAAA
TTAATTCGCG ACGGAGAGCG TTTTATACCG AATAACATAG GTTTTGAGCA TTTTTCCTGA
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| Protein sequence | MKEFQLIENF FTNRSLSRRD VELSIGDDCA LVQPAVNKSI AISCDTLVEN VHFYPDIPPQ
ALGYKSLAVN LSDLASMGAE PAWMTLALTL PDVNEQWLTE FSSGLFDAAE YYGVALIGGD
TTRGPRSITI TINGQVPTGK ALTRGGAKNG DWIYVTGTIG DSALGLDVIR GKRHVDPEHH
EYLVNRHYYP TPRVLAGQSL RGLASSAIDL SDGLASDIKH MLKRSQVGAV IDVNRLPISS
AVTDSVSKDE ALNYALMGGE DYELLFSVPE AQKGALETAL ANAGVQFTQV GQITTGDSVK
LIRDGERFIP NNIGFEHFS
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